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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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INIP
INTS3 and NABP interacting protein
Chromosome 9 · 9q32
NCBI Gene: 58493Ensembl: ENSG00000148153.14HGNC: HGNC:24994UniProt: Q9NRY2
35PubMed Papers
13Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
DNA RepairHomologous Recombination
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingdouble-strand break repair via homologous recombinationDNA repairDNA damage responsehyperpituitarismneurodegenerative diseaseFanconi anemiagastric cancer
✦AI Summary

INIP (INTS3 and NABP interacting protein) is a core component of the SOSS1 complex, a multiprotein assembly functioning downstream of the MRN complex to coordinate DNA damage responses 1. INIP associates with single-stranded DNA at DNA lesions as part of the heterotrimeric sensor of ssDNA complex alongside INTS3 and hSSB1, which forms a tetrameric structure with INTS6 1. The SOSS1 complex facilitates efficient homologous recombination-dependent repair of double-strand breaks and regulates DNA:RNA hybrid dynamics through recruitment of senataxin to DSB sites, promoting removal of damage-associated RNA transcripts and R-loops 1. INIP is required for ATM-dependent signaling pathways and G2/M checkpoint activation, contributing to genomic stability maintenance. Disease relevance includes neurodevelopmental disorders, with homozygous truncating INIP variants identified in consanguineous families with intellectual disability 2, and diabetic kidney disease, where INIP-SNX30 gene-level variants associated with disease pathogenesis 3. In pediatric B-cell precursor acute lymphoblastic leukemia, recurrent INIP deletions were identified, predominantly in cases with t(12;21) translocation 4. These findings establish INIP as a multifunctional DNA repair component with critical roles in genomic stability and disease susceptibility.

Sources cited
1
INIP is a component of the heterotrimeric SOSS1 complex that forms a tetrameric structure with INTS6, facilitates DNA:RNA hybrid regulation at DSBs, and recruits senataxin for R-loop resolution
PMID: 39445827
2
Homozygous truncating INIP variants were identified in consanguineous families with neurodevelopmental disorders and intellectual disability
PMID: 28097321
3
INIP-SNX30 gene-level variants are associated with diabetic kidney disease through genome-wide meta-analysis
PMID: 35763030
4
Recurrent focal deletions of INIP were identified in pediatric B-cell precursor acute lymphoblastic leukemia, particularly in cases with t(12;21) translocation
PMID: 27090575
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ13
hyperpituitarismOpen Targets
0.29Weak
neurodegenerative diseaseOpen Targets
0.22Weak
Fanconi anemiaOpen Targets
0.00Suggestive
gastric cancerOpen Targets
0.00Suggestive
cancerOpen Targets
0.00Suggestive
colorectal carcinomaOpen Targets
0.00Suggestive
diabetic nephropathyOpen Targets
0.00Suggestive
leukemiaOpen Targets
0.00Suggestive
head and neck squamous cell carcinomaOpen Targets
0.00Suggestive
ovarian serous cystadenocarcinomaOpen Targets
0.00Suggestive
urinary bladder cancerOpen Targets
0.00Suggestive
urinary bladder carcinomaOpen Targets
0.00Suggestive
uterine corpus endometrial carcinomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
NABP1Protein interaction100%INTS11Protein interaction100%NABP2Protein interaction89%SSBP1Protein interaction77%SSBP2Protein interaction77%INTS3Protein interaction71%
Tissue Expression6 tissues
Brain
100%
Heart
44%
Liver
37%
Bone Marrow
34%
Lung
28%
Ovary
24%
Gene Interaction Network
Click a node to explore
INIPNABP1INTS11NABP2SSBP1SSBP2INTS3
PROTEIN STRUCTURE
Preparing viewer…
PDB4OWT · 2.00 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.14LoF Tolerant
pLIⓘ
0.51Intermediate
Observed/Expected LoF0.24 [0.09–1.14]
RankingsWhere INIP stands among ~20K protein-coding genes
  • #10,987of 20,598
    Most Researched35
  • #11,779of 17,882
    Most Constrained (LOEUF)1.14
Genes detectedINIP
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Diagnostic Yield and Novel Candidate Genes by Exome Sequencing in 152 Consanguineous Families With Neurodevelopmental Disorders.
PMID: 28097321
JAMA Psychiatry · 2017
1.00
2
Genome-wide meta-analysis and omics integration identifies novel genes associated with diabetic kidney disease.
PMID: 35763030
Diabetologia · 2022
0.90
3
Tetrameric INTS6-SOSS1 complex facilitates DNA:RNA hybrid autoregulation at double-strand breaks.
PMID: 39445827
Nucleic Acids Res · 2024
0.80
4
Interictal cardiac autonomic nervous system disturbances in dogs with idiopathic epilepsy.
PMID: 29153107
Vet J · 2017
0.70
5
Effect of Nutritional Intervention Programs on Nutritional Status and Readmission Rate in Malnourished Older Adults with Pneumonia: A Randomized Control Trial.
PMID: 31783672
Int J Environ Res Public Health · 2019
0.60