HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
NABP2
nucleic acid binding protein 2
Chromosome 12 · 12q13.3
NCBI Gene: 79035Ensembl: ENSG00000139579.14HGNC: HGNC:28412UniProt: Q9BQ15
47PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
DNA RepairHomologous Recombination
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
C-rich strand telomeric DNA bindingsite of double-strand breakSOSS complexsingle-stranded DNA bindingneurodegenerative diseasehepatocellular carcinomaneoplasmHepatic fibrosis
✦AI Summary

NABP2 (nucleic acid binding protein 2), also known as SSB1, is a single-stranded DNA binding protein that serves as a key component of the SOSS (sensor of single-stranded DNA) complex. Its primary function involves DNA damage surveillance and genome maintenance through multiple interconnected pathways. NABP2 binds preferentially to single-stranded DNA, particularly polypyrimidines, and is essential for homologous recombination-dependent repair of double-strand breaks and ATM-dependent signaling 1. The protein plays a critical role in replication fork stability; NABP2-depleted cells fail to properly repair stalled replication forks and accumulate chromosome 12 1. Beyond classical DNA repair, NABP2 partners with the Integrator-PP2A complex to regulate transcription termination and suppress R-loop accumulation at promoters, a genome surveillance function enhanced by its intrinsically disordered region 2. Cancer-associated mutations in NABP2's disordered domain lead to pervasive R-loop accumulation and genomic instability 2. In prostate cancer, NABP2 modulates androgen receptor transcriptional responses and correlates with genomic instability markers 3. Recent evidence links NABP2 overexpression in hepatocellular carcinoma to poor prognosis through LKB1-mediated mitochondrial dysfunction and metabolic reprogramming 4. A genome-wide association study identified NABP2 as a novel height-associated gene 5.

Sources cited
1
NABP2/hSSB1 is required for ATR/Chk1 activation, replication fork repair, and genome stability; depletion causes accumulation of DNA strand breaks and chromosome aberrations
PMID: 24753408
2
NABP2 component of SOSS-INTAC complex suppresses R-loop accumulation at promoters; deletion or cancer-associated mutations in its disordered region cause R-loop buildup and genomic instability
PMID: 37557913
3
hSSB1/NABP2 expression correlates with genomic instability in prostate cancer and modulates androgen receptor transcriptional responses and DNA damage pathways
PMID: 36811381
4
NABP2 is overexpressed in hepatocellular carcinoma, associated with poor prognosis, and promotes tumor progression through LKB1/AMPK signaling inhibition and mitochondrial dysfunction
PMID: 40250697
5
Genome-wide association study identified NABP2 as a novel gene associated with human height variation in the Taiwanese population
PMID: 34270706
6
NABP2 C-terminal domain is essential for DNA binding ability and protein stability; the protein exhibits higher affinity for single-stranded RNA than NABP1
PMID: 26550690
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.26Weak
hepatocellular carcinomaOpen Targets
0.09Suggestive
neoplasmOpen Targets
0.08Suggestive
Hepatic fibrosisOpen Targets
0.08Suggestive
Mobius syndromeOpen Targets
0.08Suggestive
posterior cortical atrophyOpen Targets
0.07Suggestive
cancerOpen Targets
0.07Suggestive
cleidocranial dysplasia 1Open Targets
0.06Suggestive
Ear-patella-short stature syndromeOpen Targets
0.06Suggestive
atelosteogenesis type IOpen Targets
0.06Suggestive
atelosteogenesis type IIOpen Targets
0.05Suggestive
Achondrogenesis type 1AOpen Targets
0.05Suggestive
craniometadiaphyseal dysplasia, wormian bone typeOpen Targets
0.05Suggestive
Achondrogenesis type 2Open Targets
0.05Suggestive
acrocapitofemoral dysplasiaOpen Targets
0.05Suggestive
acrofacial dysostosis Rodriguez typeOpen Targets
0.05Suggestive
Acrofacial dysostosis, Rodríguez typeOpen Targets
0.05Suggestive
platyspondylic dysplasia, Torrance typeOpen Targets
0.05Suggestive
X-linked dominant chondrodysplasia, Chassaing-Lacombe typeOpen Targets
0.05Suggestive
metaphyseal dysostosis-intellectual disability-conductive deafness syndromeOpen Targets
0.05Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
INTS5Protein interaction100%INTS1Protein interaction100%INTS6Protein interaction100%INTS11Protein interaction100%INTS9Protein interaction100%INIPProtein interaction89%
Tissue Expression6 tissues
Brain
100%
Ovary
56%
Liver
50%
Bone Marrow
44%
Heart
43%
Lung
39%
Gene Interaction Network
Click a node to explore
NABP2INTS5INTS1INTS6INTS11INTS9INIP
PROTEIN STRUCTURE
Preparing viewer…
PDB4OWT · 2.00 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.55Moderately Constrained
pLIⓘ
0.94Intolerant
Observed/Expected LoF0.29 [0.17–0.55]
RankingsWhere NABP2 stands among ~20K protein-coding genes
  • #9,243of 20,598
    Most Researched47
  • #3,515of 17,882
    Most Constrained (LOEUF)0.55 · top quartile
Genes detectedNABP2
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
R-loop-dependent promoter-proximal termination ensures genome stability.
PMID: 37557913
Nature · 2023
1.00
2
Autophagy deficiency abolishes liver mitochondrial DNA segregation.
PMID: 35220898
Autophagy · 2022
0.90
3
SSBP1.
PMID: 30487381
Int Heart J · 2018
0.80
4
A circular RNA derived from the insulin receptor locus protects against doxorubicin-induced cardiotoxicity.
PMID: 35758064
Eur Heart J · 2022
0.70
5
C-termini are essential and distinct for nucleic acid binding of human NABP1 and NABP2.
PMID: 26550690
Biochim Biophys Acta · 2016
0.60