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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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NABP1
nucleic acid binding protein 1
Chromosome 2 · 2q32.3
NCBI Gene: 64859Ensembl: ENSG00000173559.16HGNC: HGNC:26232UniProt: Q96AH0
23PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
DNA RepairHomologous Recombination
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleoplasmcytosolsite of double-strand breakprotein bindingCachexiasmoking initiationliver diseasemultiple sclerosis
✦AI Summary

NABP1 (nucleic acid binding protein 1) is a single-stranded DNA binding protein that functions as a component of the SOSS complex, a multiprotein assembly operating downstream of the MRN complex to promote DNA repair and G2/M checkpoint control 1. NABP1 contains a conserved oligonucleotide-binding (OB) fold domain responsible for ssDNA recognition, particularly of polypyrimidine sequences, and a flexible C-terminal extension mediating protein-protein interactions 2. The protein recognizes UV-damaged DNA structures, including cyclobutane pyrimidine dimers, through four key aromatic residues within its OB domain 3. NABP1 is essential for efficient homologous recombination-dependent repair of double-strand breaks and ATM-dependent signaling, thereby maintaining genomic stability. Clinically, NABP1 dysregulation is implicated in multiple malignancies. In hepatocellular carcinoma post-TACE treatment, elevated NABP1+ malignant hepatocytes correlate with poor treatment response and dismal prognosis 4. NABP1 expression can be suppressed by miR-26a-5p, creating a homologous recombination repair defect (HRD) phenotype that enhances chemotherapy sensitivity in triple-negative breast cancer 5. Additionally, NABP1 genetic variants are associated with laryngeal squamous cell carcinoma patient survival outcomes 6, and NABP1 fusions occur as rare variants in acute promyelocytic leukemia 7.

Sources cited
1
NABP1 is a single-stranded DNA-binding protein essential for genome integrity and DNA repair processes, composed of a conserved OB fold and flexible C-terminal extension
PMID: 29063999
2
NABP1 C-terminal region is essential for nucleic acid binding functionality, multimerization on ssDNA, and protein stability
PMID: 26550690
3
NABP1 recognizes UV-damaged DNA including cyclobutane pyrimidine dimers through four key aromatic residues in its OB domain
PMID: 31443132
4
Elevated NABP1+ malignant hepatocytes after TACE correlate with poor treatment response and dismal prognosis in HBV-related HCC; NABP1 knockdown inhibits HCC cell proliferation and migration
PMID: 39365124
5
miR-26a-5p negatively regulates NABP1 expression, creating homologous recombination repair defect and enhancing chemotherapy sensitivity in triple-negative breast cancer
PMID: 37365643
6
NABP1 genetic polymorphisms are associated with survival outcomes in laryngeal squamous cell carcinoma patients
PMID: 27793000
7
NABP1 fusions are rare translocation variants identified in acute promyelocytic leukemia cases
PMID: 32473106
Disease Associationsⓘ20
CachexiaOpen Targets
0.27Weak
smoking initiationOpen Targets
0.26Weak
liver diseaseOpen Targets
0.24Weak
multiple sclerosisOpen Targets
0.22Weak
TorticollisOpen Targets
0.20Weak
Abnormality of the integumentOpen Targets
0.19Weak
JaundiceOpen Targets
0.19Weak
SplenomegalyOpen Targets
0.19Weak
thyroid cancerOpen Targets
0.19Weak
Pathologic fractureOpen Targets
0.11Weak
hypothyroidismOpen Targets
0.11Weak
hepatitis C virus infectionOpen Targets
0.10Weak
neoplasmOpen Targets
0.08Suggestive
breast cancerOpen Targets
0.06Suggestive
familial male-limited precocious pubertyOpen Targets
0.05Suggestive
hypogonadotropic hypogonadism 11 with or without anosmiaOpen Targets
0.05Suggestive
spermatogenic failure, X-linked, 2Open Targets
0.05Suggestive
46,XX testicular disorder of sex developmentOpen Targets
0.05Suggestive
Testicular regression syndromeOpen Targets
0.05Suggestive
liver cancerOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
INIPProtein interaction100%INTS5Protein interaction100%NABP2Protein interaction89%INTS3Protein interaction86%INTS6Protein interaction79%INTS11Protein interaction79%
Tissue Expression6 tissues
Lung
100%
Liver
24%
Ovary
17%
Bone Marrow
14%
Heart
5%
Brain
4%
Gene Interaction Network
Click a node to explore
NABP1INIPINTS5NABP2INTS3INTS6INTS11
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q96AH0
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.53LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.93 [0.58–1.53]
RankingsWhere NABP1 stands among ~20K protein-coding genes
  • #13,467of 20,598
    Most Researched23
  • #15,338of 17,882
    Most Constrained (LOEUF)1.53
Genes detectedNABP1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Genotypic and Phenotypic Characteristics of Acute Promyelocytic Leukemia Translocation Variants.
PMID: 32473106
Hematol Oncol Stem Cell Ther · 2020
1.00
2
Enhanced interactions within microenvironment accelerates dismal prognosis in HBV-related HCC after TACE.
PMID: 39365124
Hepatol Commun · 2024
0.90
3
C-termini are essential and distinct for nucleic acid binding of human NABP1 and NABP2.
PMID: 26550690
Biochim Biophys Acta · 2016
0.80
4
The inhibition of ZC3H13 attenuates G2/M arrest and apoptosis by alleviating NABP1 m6A modification in cisplatin-induced acute kidney injury.
PMID: 39985591
Cell Mol Life Sci · 2025
0.70
5
Transcriptionally regulated miR-26a-5p may act as BRCAness in Triple-Negative Breast Cancer.
PMID: 37365643
Breast Cancer Res · 2023
0.60