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GeneE
2 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
LCA5L
lebercilin LCA5 like
Chromosome 21 Β· 21q22.2
NCBI Gene: 150082Ensembl: ENSG00000157578.14HGNC: HGNC:1255UniProt: O95447
24PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingintraciliary transportaxonemeneurodegenerative diseasedehydrated hereditary stomatocytosisRh deficiency syndromeHemolytic anemia due to red cell pyruvate kinase deficiency
✦AI Summary

Based on limited published evidence, LCA5L (lebercilin LCA5 like) is a protein involved in ciliary biology with annotations indicating roles in protein binding, axoneme structure, and intraciliary transport. A genome-wide association study identified LCA5L as part of a risk locus (rs2837022) associated with non-suicidal self-injury, with colocalization evidence suggesting nearby SH3BGR/GET1 expression in the hippocampus contributes to this phenotype 1. LCA5L was also identified as a down-regulated protein in liver tissues of non-alcoholic steatohepatitis patients 2. However, direct functional characterization of LCA5L remains limited.

Sources cited
1
LCA5L locus (rs2837022) associated with non-suicidal self-injury risk through hippocampal gene expression effects
PMID: 40347941
2
LCA5L identified as significantly down-regulated protein in NASH liver tissue proteomic analysis
PMID: 34658353
⚠Limited data available β€” This gene has 2 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜20
neurodegenerative diseaseOpen Targets
0.27Weak
dehydrated hereditary stomatocytosisOpen Targets
0.05Suggestive
Rh deficiency syndromeOpen Targets
0.05Suggestive
Hemolytic anemia due to red cell pyruvate kinase deficiencyOpen Targets
0.05Suggestive
gluthathione peroxidase deficiencyOpen Targets
0.05Suggestive
hemoglobin D diseaseOpen Targets
0.05Suggestive
Hemoglobin E - beta-thalassemiaOpen Targets
0.04Suggestive
hemoglobin E-beta-thalassemia syndromeOpen Targets
0.04Suggestive
hemolytic anemia due to erythrocyte adenosine deaminase overproductionOpen Targets
0.04Suggestive
retinitis pigmentosa and erythrocytic microcytosisOpen Targets
0.04Suggestive
hereditary persistence of fetal hemoglobin-sickle cell disease syndromeOpen Targets
0.04Suggestive
hemolytic anemia due to glutathione reductase deficiencyOpen Targets
0.04Suggestive
thrombophiliaOpen Targets
0.04Suggestive
primary familial polycythemia due to EPO receptor mutationOpen Targets
0.04Suggestive
elliptocytosis 2Open Targets
0.04Suggestive
malariaOpen Targets
0.04Suggestive
Beta-thalassemia - X-linked thrombocytopeniaOpen Targets
0.04Suggestive
beta-thalassemia-X-linked thrombocytopenia syndromeOpen Targets
0.04Suggestive
megaloblastic anemia, folate-responsiveOpen Targets
0.04Suggestive
ThrombocytopeniaOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar β†—
Related Genes
IFT70AShared pathway100%LCA5Shared pathway50%TUBShared pathway33%IFT70BShared pathway33%DYNC2I2Shared pathway33%IFT52Shared pathway33%
Tissue Expression6 tissues
Ovary
100%
Liver
82%
Brain
70%
Lung
61%
Heart
46%
Bone Marrow
42%
Gene Interaction Network
Click a node to explore
LCA5LIFT70ALCA5TUBIFT70BDYNC2I2IFT52
PROTEIN STRUCTURE
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AlphaFoldAI-predicted Β· UniProt O95447
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.10LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.75 [0.52–1.10]
RankingsWhere LCA5L stands among ~20K protein-coding genes
  • #13,225of 20,598
    Most Researched24
  • #11,248of 17,882
    Most Constrained (LOEUF)1.10
Genes detectedLCA5L
Sources retrieved2 papers
Response timeβ€”
πŸ“„ Sources
2
1
Multitrait GWAS of non-suicidal self-injury and the polygenetic effects on child psychopathology and brain structures.
PMID: 40347941
Cell Rep Med Β· 2025
1.00
2
[Quantitative analysis of differential proteins in liver tissues of patients with non-alcoholic steatohepatitis using iTRAQ technology].
PMID: 34658353
Nan Fang Yi Ke Da Xue Xue Bao Β· 2021
0.50