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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
LGI1
leucine rich glioma inactivated 1
Chromosome 10 Β· 10q23.33
NCBI Gene: 9211Ensembl: ENSG00000108231.14HGNC: HGNC:6572UniProt: A0A0S2Z4S7
90PubMed Papers
21Diseases
0Drugs
71Pathogenic Variants
FUNCTIONAL ROLE
Highly Constrained
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
GO:0005615axon guidancepositive regulation of cell growthneuron projection developmentautosomal dominant epilepsy with auditory featuresSeizuregenetic disorderepilepsy with auditory features
✦AI Summary

LGI1 is a leucine-rich extracellular protein that functions as a critical regulator of neuronal excitability and synaptic transmission. Structurally, LGI1 acts as a ligand for ADAM22 and regulates voltage-gated potassium channels (VGKC) assembled from KCNA1, KCNA4, and KCNAB1 subunits by slowing channel inactivation [UniProt]. Additionally, LGI1 positively regulates AMPA-type glutamate receptor-mediated synaptic transmission and plays a role in synaptic assembly and neuronal development. Clinically, LGI1 is central to autoimmune encephalitis pathogenesis. Anti-LGI1 antibodies are among the most common causes of autoimmune encephalitis in developed countries 1, presenting as a characteristic syndrome of faciobrachial dystonic seizures (FBDS) and limbic encephalitis with cognitive impairment 2. LGI1 IgG4 antibodies disrupt LGI1's interaction with cognate proteins and alter AMPAR-mediated signaling, causing neuronal dysfunction 3. Anti-LGI1 encephalitis shows excellent immunotherapy responsiveness, particularly to corticosteroids, with 80% of patients showing substantial improvement 24. However, long-term sequelae including persistent amnesia and short-term memory deficits occur in approximately one-third of surviving patients 4. Early recognition of FBDS and characteristic MRI findings of temporal lobe hyperintensities without diffusion restriction are essential for prompt treatment initiation 5.

Sources cited
1
Anti-LGI1 encephalitis presents with faciobrachial dystonic seizures, focal seizures, memory disturbance, and shows 80% response to immunotherapy with 35% relapse rate
PMID: 27590293
2
Corticosteroids are more effective than IVIg for acute LGI1 antibody encephalitis; long-term outcome is favorable but short-term memory deficits persist in ~37% of patients
PMID: 34824144
3
LGI1-antibody encephalitis shows characteristic MRI findings: temporal lobe T2/FLAIR hyperintensities without diffusion restriction or contrast enhancement, distinguishing it from viral encephalitis and CJD
PMID: 38497971
4
LGI1 IgG4 antibodies induce neuronal dysfunction by disrupting interaction with cognate proteins and altering AMPAR-mediated signaling
PMID: 38667756
5
Anti-LGI1 encephalitis is one of the most common forms of autoimmune encephalitis presenting with cognitive changes and distinct seizure types
PMID: 31808454
6
LGI1 antibodies are components of the voltage-gated potassium channel complex involved in neuromuscular hyperexcitability syndromes
PMID: 34914668
7
LGI1 is the most common target within the VGKC complex, associated with limbic encephalitis and disease-specific faciobrachial dystonic seizures
PMID: 26844739
8
LGI1 antibodies have been detected in ~90% of patients with faciobrachial dystonic seizures and show dramatic response to immunotherapies
PMID: 21358545
Disease Associationsβ“˜21
autosomal dominant epilepsy with auditory featuresOpen Targets
0.82Strong
SeizureOpen Targets
0.50Moderate
genetic disorderOpen Targets
0.38Weak
epilepsy with auditory featuresOpen Targets
0.37Weak
genitopatellar syndromeOpen Targets
0.34Weak
respiratory system diseaseOpen Targets
0.32Weak
exostosisOpen Targets
0.28Weak
subarachnoid hemorrhageOpen Targets
0.27Weak
Bilateral tonic-clonic seizureOpen Targets
0.12Weak
encephalitisOpen Targets
0.12Weak
Intellectual disabilityOpen Targets
0.12Weak
epilepsyOpen Targets
0.11Weak
generalised epilepsyOpen Targets
0.09Suggestive
temporal lobe epilepsyOpen Targets
0.09Suggestive
Benign familial neonatal seizuresOpen Targets
0.09Suggestive
Generalized epilepsy with febrile seizures-plusOpen Targets
0.08Suggestive
Alzheimer diseaseOpen Targets
0.08Suggestive
Febrile seizure (within the age range of 3 months to 6 years)Open Targets
0.08Suggestive
juvenile myoclonic epilepsyOpen Targets
0.08Suggestive
Rolandic epilepsyOpen Targets
0.08Suggestive
Epilepsy, familial temporal lobe, 1UniProt
Pathogenic Variants71
NM_005097.4(LGI1):c.1439_1442del (p.Gln480fs)Pathogenic
Autosomal dominant epilepsy with auditory features|Inborn genetic diseases
β˜…β˜…β˜†β˜†2026β†’ Residue 480
NM_005097.4(LGI1):c.108del (p.Lys36fs)Pathogenic
Autosomal dominant epilepsy with auditory features|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 36
NM_005097.4(LGI1):c.1418C>T (p.Ser473Leu)Pathogenic
Epilepsy, familial temporal lobe, 1|Autosomal dominant epilepsy with auditory features|Seizure
β˜…β˜…β˜†β˜†2025β†’ Residue 473
NM_005097.4(LGI1):c.1580_1581del (p.His527fs)Pathogenic
Autosomal dominant epilepsy with auditory features|Epilepsy, familial temporal lobe, 1|not provided|Seizure
β˜…β˜…β˜†β˜†2025β†’ Residue 527
NM_005097.4(LGI1):c.504-1G>TLikely pathogenic
Autosomal dominant epilepsy with auditory features|Inborn genetic diseases
β˜…β˜…β˜†β˜†2024
NM_005097.4(LGI1):c.931C>T (p.Arg311Ter)Likely pathogenic
not provided|Seizure|Developmental and epileptic encephalopathy 121
β˜…β˜…β˜†β˜†2024β†’ Residue 311
NM_005097.4(LGI1):c.406C>T (p.Arg136Trp)Pathogenic
Epilepsy, familial temporal lobe, 1|not provided|Autosomal dominant epilepsy with auditory features|LGI1-related disorder
β˜…β˜…β˜†β˜†2024β†’ Residue 136
NM_005097.4(LGI1):c.1421G>A (p.Arg474Gln)Likely pathogenic
not provided|Autosomal dominant epilepsy with auditory features
β˜…β˜…β˜†β˜†2023β†’ Residue 474
NM_005097.4(LGI1):c.988C>T (p.Arg330Ter)Pathogenic
Autosomal dominant epilepsy with auditory features|Epilepsy, familial temporal lobe, 1
β˜…β˜…β˜†β˜†2023β†’ Residue 330
NM_005097.4(LGI1):c.1035C>G (p.Tyr345Ter)Pathogenic
Autosomal dominant epilepsy with auditory features
β˜…β˜†β˜†β˜†2026β†’ Residue 345
NM_005097.4(LGI1):c.808_809del (p.Lys270fs)Pathogenic
Autosomal dominant epilepsy with auditory features
β˜…β˜†β˜†β˜†2025β†’ Residue 270
NM_005097.4(LGI1):c.942del (p.Phe314fs)Pathogenic
Autosomal dominant epilepsy with auditory features
β˜…β˜†β˜†β˜†2025β†’ Residue 314
NM_005097.4(LGI1):c.856T>G (p.Cys286Gly)Likely pathogenic
Epilepsy, familial temporal lobe, 1
β˜…β˜†β˜†β˜†2025β†’ Residue 286
NM_005097.4(LGI1):c.794G>A (p.Trp265Ter)Likely pathogenic
Epilepsy, familial temporal lobe, 1
β˜…β˜†β˜†β˜†2025β†’ Residue 265
NM_005097.4(LGI1):c.749dup (p.Val251fs)Likely pathogenic
Epilepsy, familial temporal lobe, 1
β˜…β˜†β˜†β˜†2025β†’ Residue 251
NM_005097.4(LGI1):c.1420C>T (p.Arg474Ter)Pathogenic
Epilepsy, familial temporal lobe, 1|Autosomal dominant epilepsy with auditory features
β˜…β˜†β˜†β˜†2024β†’ Residue 474
NM_005097.4(LGI1):c.1636_1637del (p.Gln546fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 546
NM_005097.4(LGI1):c.674-1G>ALikely pathogenic
not provided
β˜…β˜†β˜†β˜†2024
NM_005097.4(LGI1):c.1128G>A (p.Trp376Ter)Pathogenic
Autosomal dominant epilepsy with auditory features
β˜…β˜†β˜†β˜†2024β†’ Residue 376
NM_005097.4(LGI1):c.416del (p.Lys139fs)Pathogenic
Autosomal dominant epilepsy with auditory features
β˜…β˜†β˜†β˜†2024β†’ Residue 139
View on ClinVar β†—
Related Genes
DLG4Protein interaction100%CNTN2Protein interaction100%KCNA1Protein interaction100%KCNA2Protein interaction93%ADAM11Protein interaction91%ADAM28Protein interaction90%
Tissue Expression6 tissues
Brain
100%
Liver
10%
Heart
3%
Ovary
1%
Lung
0%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
LGI1DLG4CNTN2KCNA1KCNA2ADAM11ADAM28
PROTEIN STRUCTURE
Preparing viewer…
PDB5Y30 Β· 1.78 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.33Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.19 [0.12–0.33]
RankingsWhere LGI1 stands among ~20K protein-coding genes
  • #5,315of 20,598
    Most Researched90
  • #1,028of 5,498
    Most Pathogenic Variants71 Β· top quartile
  • #1,384of 17,882
    Most Constrained (LOEUF)0.33 Β· top 10%
Genes detectedLGI1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Neuromuscular hyperexcitability syndromes.
PMID: 34914668
Curr Opin Neurol Β· 2021
1.00
2
Anti-LGI1 encephalitis: Clinical syndrome and long-term follow-up.
PMID: 27590293
Neurology Β· 2016
0.90
3
Magnetic Resonance Imaging Characteristics of LGI1-Antibody and CASPR2-Antibody Encephalitis.
PMID: 38497971
JAMA Neurol Β· 2024
0.80
4
LGI1 antibody encephalitis: acute treatment comparisons and outcome.
PMID: 34824144
J Neurol Neurosurg Psychiatry Β· 2022
0.70
5
Autoimmune encephalitis.
PMID: 31808454
J R Coll Physicians Edinb Β· 2019
0.60