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3 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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LIMS3
LIM zinc finger domain containing 3
Chromosome 2 · 2q13
NCBI Gene: 96626Ensembl: ENSG00000256671.7HGNC: HGNC:30047UniProt: A0A0J9YXC7
11PubMed Papers
14Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Swiss-Prot Reviewed
cytoplasmcancercarcinomamesotheliomaMalignant Mesothelioma
✦AI Summary

LIMS3 (LIM zinc finger domain containing 3) is a LIM-domain containing protein located on chromosome 2. While direct functional characterization is limited in the provided literature, LIMS3 is identified as an evolutionarily conserved developmental gene involved in nuclear-cytoplasm trafficking and signaling for tissue patterning and differentiation 1. The gene's developmental importance is evident from its association with congenital abnormalities when deleted; a patient with intermittent 2q13 deletion encompassing LIMS3 displayed multiple congenital anomalies with greater severity than comparable cases, suggesting LIMS3 contributes to normal developmental patterning 1. LIMS3 deletions have also been identified in nephronophthisis (NPHP) patients as part of larger copy number variants; heterozygous deletion of a region including LIMS3 was associated with accelerated chr2 kidney disease progression, implying LIMS3 may influence renal development or function 2. The clinical significance of LIMS3 lies in its role as a potential modifier of disease severity in developmental and renal disorders, though the specific molecular mechanisms underlying its function require further investigation.

Sources cited
1
LIMS3 is an evolutionarily conserved developmental gene in the 2q13 region involved in nuclear-cytoplasm trafficking and signaling for tissue patterning and differentiation; its deletion contributes to congenital anomaly severity
PMID: 25617521
2
LIMS3 is located in a heterozygous deletion region (2q13) associated with accelerated progression of nephronophthisis-induced chronic kidney disease
PMID: 37203120
⚠Limited data available — This gene has 2 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ14
cancerOpen Targets
0.01Suggestive
carcinomaOpen Targets
0.01Suggestive
mesotheliomaOpen Targets
0.01Suggestive
Malignant MesotheliomaOpen Targets
0.01Suggestive
infectionOpen Targets
0.00Suggestive
Abnormal sperm morphologyOpen Targets
0.00Suggestive
Global developmental delayOpen Targets
0.00Suggestive
oligospermiaOpen Targets
0.00Suggestive
Timothy syndromeOpen Targets
0.00Suggestive
chronic kidney diseaseOpen Targets
0.00Suggestive
ovarian carcinomaOpen Targets
0.00Suggestive
breast carcinomaOpen Targets
0.00Suggestive
KeloidOpen Targets
0.00Suggestive
Neurodevelopmental disorderOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ILKProtein interaction88%RSU1Protein interaction88%PARVBProtein interaction88%PARVAProtein interaction88%PARVGProtein interaction88%
Tissue Expression6 tissues
Ovary
100%
Heart
0%
Lung
0%
Bone Marrow
0%
Liver
0%
Brain
0%
Gene Interaction Network
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LIMS3ILKRSU1PARVBPARVAPARVG
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt P0CW19
View on AlphaFold ↗
RankingsWhere LIMS3 stands among ~20K protein-coding genes
  • #16,812of 20,598
    Most Researched11
Genes detectedLIMS3
Sources retrieved3 papers
Response time—
📄 Sources
3
1
The single-cell transcriptomic atlas and RORA-mediated 3D epigenomic remodeling in driving corneal epithelial differentiation.
PMID: 38177186
Nat Commun · 2024
1.00
2
Co-occurrence of mosaic supernumerary isochromosome 18p and intermittent 2q13 deletions in a child with multiple congenital anomalies.
PMID: 25617521
Gene · 2015
0.67
3
Two rare copy number variants involving loss of
PMID: 37203120
Niger J Clin Pract · 2023
0.33