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9 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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LSM5
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
Chromosome 7 · 7p14.3
NCBI Gene: 23658Ensembl: ENSG00000106355.11HGNC: HGNC:17162UniProt: A0A090N8Y5
59PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
mRNA catabolic processprotein bindingprotein heterodimerization activitymRNA splicing, via spliceosomeneurodegenerative diseaseintelligenceheart failureattention deficit hyperactivity disorder
✦AI Summary

LSM5 (LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated) is a core spliceosomal component that functions as part of the heptameric LSM2-8 complex, which binds the 3'-terminal U-tract of U6 snRNA and participates in U4/U6-U5 tri-snRNP assembly and precatalytic spliceosome formation 1. Beyond its canonical role in pre-mRNA splicing, LSM5 regulates circadian rhythm timing; mutations in LSM5 lengthen circadian periods in plants and mammals, suggesting it fine-tunes specific signaling pathways through alternative splicing regulation 2. In disease contexts, LSM5 dysregulation has significant clinical implications. LSM5 is upregulated in nasopharyngeal carcinoma tissues, correlating with poor prognosis; knockdown inhibits cell proliferation and migration 3. Similarly, in colon cancer, elevated LSM5 expression associates with poor prognosis, and its silencing suppresses proliferation while promoting apoptosis through p53, CDKN1A, and TNFRSF10B upregulation 4. LSM5 appears among candidate irinotecan resistance markers in colorectal cancer 5. Additionally, genetic variants in LSM5 (rs215702) associate with asthenozoospermia in male infertility 6, and LSM5 protein levels are downregulated in CD8+ T lymphocytes across breast cancer subtypes 7. LSM5 also serves as a diagnostic biomarker for postmenopausal osteoporosis 8, suggesting broad pathophysiological relevance.

Sources cited
1
LSM5 component of U4/U6-U5 tri-snRNP complex and precatalytic spliceosome (B complex) in pre-mRNA splicing
PMID: 28781166
2
LSM5 mutations lengthen circadian period in plants and mammals; LSM5 fine-tunes signaling through alternative splicing regulation
PMID: 25288739
3
LSM5 overexpressed in nasopharyngeal carcinoma; knockdown inhibits proliferation and migration; adverse biomarker for NPC prognosis
PMID: 40121338
4
LSM5 highly expressed in colon cancer; high expression correlates with poor prognosis; knockdown suppresses proliferation and promotes apoptosis via p53/CDKN1A/TNFRSF10B upregulation
PMID: 38994171
5
LSM5 identified as candidate irinotecan resistance marker in colorectal cancer through integrated bioinformatics analysis
PMID: 35885025
6
LSM5 SNP rs215702 strongly associated with asthenozoospermia in Chinese Han males
PMID: 27232852
7
LSM5 protein significantly downregulated in CD8+ T lymphocytes across breast cancer subtypes in RNA degradation pathway
PMID: 38928129
8
LSM5 identified as diagnostic biomarker for postmenopausal osteoporosis through WGCNA and single-cell transcriptomics
PMID: 39364870
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.50Moderate
intelligenceOpen Targets
0.28Weak
heart failureOpen Targets
0.21Weak
attention deficit hyperactivity disorderOpen Targets
0.21Weak
protozoa infectious diseaseOpen Targets
0.20Weak
food allergyOpen Targets
0.20Weak
autism spectrum disorderOpen Targets
0.20Weak
insomniaOpen Targets
0.20Weak
schizophreniaOpen Targets
0.19Weak
Abnormality of the skeletal systemOpen Targets
0.18Weak
mathematical abilityOpen Targets
0.16Weak
smoking initiationOpen Targets
0.14Weak
obesityOpen Targets
0.13Weak
smoking cessationOpen Targets
0.13Weak
injuryOpen Targets
0.12Weak
type 2 diabetes mellitusOpen Targets
0.12Weak
Abruptio PlacentaeOpen Targets
0.11Weak
nicotine dependenceOpen Targets
0.10Suggestive
gastroesophageal reflux diseaseOpen Targets
0.09Suggestive
SplenomegalyOpen Targets
0.05Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
SNU13Protein interaction100%SART3Protein interaction100%SNRNP27Protein interaction100%SF3B2Protein interaction100%PRPF6Protein interaction100%SF3B5Protein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
98%
Heart
74%
Liver
72%
Ovary
59%
Lung
41%
Gene Interaction Network
Click a node to explore
LSM5SNU13SART3SNRNP27SF3B2PRPF6SF3B5
PROTEIN STRUCTURE
Preparing viewer…
PDB8H6L · 2.60 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.44LoF Tolerant
pLIⓘ
0.23Tolerant
Observed/Expected LoF0.48 [0.19–1.44]
RankingsWhere LSM5 stands among ~20K protein-coding genes
  • #7,788of 20,598
    Most Researched59
  • #14,789of 17,882
    Most Constrained (LOEUF)1.44
Genes detectedLSM5
Sources retrieved9 papers
Response time—
📄 Sources
9▼
1
Integrated Single-cell RNA-seq and Bulk RNA-seq Identify Diagnostic Biomarkers for Postmenopausal Osteoporosis.
PMID: 39364870
Curr Med Chem · 2025
1.00
2
Identification of RNA processing factor LSM5 as a new adverse biomarker in nasopharyngeal carcinoma.
PMID: 40121338
Sci Rep · 2025
0.89
3
Role for LSM genes in the regulation of circadian rhythms.
PMID: 25288739
Proc Natl Acad Sci U S A · 2014
0.78
4
Sm-like 5 knockdown inhibits proliferation and promotes apoptosis of colon cancer cells by upregulating p53, CDKN1A and TNFRSF10B.
PMID: 38994171
World J Gastrointest Oncol · 2024
0.67
5
Integrated Bioinformatics Analysis of the Hub Genes Involved in Irinotecan Resistance in Colorectal Cancer.
PMID: 35885025
Biomedicines · 2022
0.56