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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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LYPD1
LY6/PLAUR domain containing 1
Chromosome 2 · 2q21.2
NCBI Gene: 116372Ensembl: ENSG00000150551.12HGNC: HGNC:28431UniProt: Q8N2G4
18PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
acetylcholine receptor inhibitor activityacetylcholine receptor signaling pathwayextracellular regionplasma membraneovarian neoplasmneurodegenerative diseasetuberculosisParalytic ileus
✦AI Summary

LYPD1 (LY6/PLAUR domain containing 1) is a secreted protein that functions primarily as an anti-angiogenic factor and modulator of cellular processes. The protein demonstrates potent anti-angiogenic properties, with cardiac fibroblasts using LYPD1 to inhibit vascular endothelial cell sprouting and network formation 1. This anti-angiogenic activity is regulated by the transcription factor GATA6, which controls LYPD1 expression in cardiac fibroblasts 2. LYPD1 is expressed throughout the central nervous system 3 and appears in various pathological contexts. In systemic sclerosis, serum LYPD1 levels correlate with skin thickness scores and IL-6 levels, suggesting its potential as a biomarker for monitoring skin fibrosis 4. The protein has emerged as a therapeutic target in cancer treatment, being broadly expressed in ovarian cancer (~70% prevalence in serous subtype) where bispecific antibodies targeting LYPD1 and CD3 demonstrate significant anti-tumor activity 56. Additionally, LYPD1 shows prognostic value in bladder cancer, where its overexpression inhibits cell proliferation, migration, and invasion 7. The protein is also included in prognostic models for lung adenocarcinoma based on exosome-derived genes 8.

Sources cited
1
LYPD1 functions as an anti-angiogenic factor, with cardiac fibroblasts using it to inhibit vascular endothelial cell sprouting and network formation
PMID: 29550615
2
GATA6 transcription factor regulates LYPD1 expression in cardiac fibroblasts, controlling their anti-angiogenic properties
PMID: 37251737
3
LYPD1 is highly expressed throughout the central nervous system
PMID: 17488974
4
Serum LYPD1 levels correlate with skin thickness scores and IL-6 levels in systemic sclerosis patients
PMID: 38448661
5
LYPD1 is broadly expressed in ovarian cancer with ~70% prevalence in serous subtype and serves as target for bispecific antibody therapy
PMID: 33536191
6
Anti-LYPD1 bispecific antibodies demonstrate anti-tumor activity in high-grade serous ovarian cancer
PMID: 34290299
7
LYPD1 overexpression inhibits bladder cancer cell proliferation, migration, and invasion
PMID: 38332160
8
LYPD1 is included in prognostic models for lung adenocarcinoma based on exosome-derived genes
PMID: 40179422
Disease Associationsⓘ20
ovarian neoplasmOpen Targets
0.32Weak
neurodegenerative diseaseOpen Targets
0.28Weak
tuberculosisOpen Targets
0.14Weak
Paralytic ileusOpen Targets
0.14Weak
alcohol drinkingOpen Targets
0.14Weak
liver diseaseOpen Targets
0.10Weak
poisoningOpen Targets
0.10Weak
breast neoplasmOpen Targets
0.10Weak
morbid obesityOpen Targets
0.10Suggestive
cataractOpen Targets
0.09Suggestive
atopic eczemaOpen Targets
0.09Suggestive
AnxietyOpen Targets
0.08Suggestive
hepatocellular carcinomaOpen Targets
0.07Suggestive
systemic sclerodermaOpen Targets
0.07Suggestive
vitreous body diseaseOpen Targets
0.07Suggestive
trauma complicationOpen Targets
0.07Suggestive
neoplasmOpen Targets
0.06Suggestive
diabetes mellitusOpen Targets
0.05Suggestive
endocrine neoplasmOpen Targets
0.04Suggestive
breast cancerOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
LY6G6DShared pathway100%LYNX1Shared pathway100%LY6SShared pathway100%SLURP2Shared pathway100%GPR39Protein interaction90%SLURP1Protein interaction80%
Tissue Expression6 tissues
Brain
100%
Liver
9%
Heart
7%
Bone Marrow
5%
Ovary
4%
Lung
4%
Gene Interaction Network
Click a node to explore
LYPD1LY6G6DLYNX1LY6SSLURP2GPR39SLURP1
PROTEIN STRUCTURE
Preparing viewer…
PDB6ZSS · NMR
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.42LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.91 [0.60–1.42]
RankingsWhere LYPD1 stands among ~20K protein-coding genes
  • #14,734of 20,598
    Most Researched18
  • #14,660of 17,882
    Most Constrained (LOEUF)1.42
Genes detectedLYPD1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
GPR39 splice variants versus antisense gene LYPD1: expression and regulation in gastrointestinal tract, endocrine pancreas, liver, and white adipose tissue.
PMID: 17488974
Mol Endocrinol · 2007
1.00
2
Association of serum Ly6/PLAUR domain-containing protein 1 levels with skin sclerosis in systemic sclerosis.
PMID: 38448661
Sci Rep · 2024
0.90
3
GATA6 regulates anti-angiogenic properties in human cardiac fibroblasts via modulating LYPD1 expression.
PMID: 37251737
Regen Ther · 2023
0.80
4
Anti-LYPD1/CD3 T-Cell-Dependent Bispecific Antibody for the Treatment of Ovarian Cancer.
PMID: 33536191
Mol Cancer Ther · 2021
0.70
5
PAX8 lineage-driven T cell engaging antibody for the treatment of high-grade serous ovarian cancer.
PMID: 34290299
Sci Rep · 2021
0.60