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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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NLGN1
neuroligin 1
Chromosome 3 · 3q26.31
NCBI Gene: 22871Ensembl: ENSG00000169760.18HGNC: HGNC:14291UniProt: A0A8Q3SHM6
69PubMed Papers
21Diseases
0Drugs
0Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
positive regulation of excitatory postsynaptic potentialpositive regulation of synapse assemblyneuron projection developmentPDZ domain bindingtype 2 diabetes mellitusAbnormality of the skeletal systemobesitysmoking initiation
✦AI Summary

NLGN1 (neuroligin 1) is a postsynaptic cell adhesion molecule that mediates cell-cell interactions through neurexin binding, playing a critical role in synaptic function and development 1. At excitatory synapses, NLGN1 recruits and clusters synaptic proteins, promotes presynaptic structure formation, and regulates NMDA and AMPA glutamate receptor clustering 2. Its synaptic localization is dynamically regulated through PKA-dependent phosphorylation of serine 839, which modulates PSD-95 binding and controls surface expression and synaptic enhancement 2. In the prefrontal cortex, NLGN1 expression shifts in response to experience regulate memory consolidation and strengthening through modulation of excitatory-inhibitory balance 1. Genetically, NLGN1 variants associate with multiple neuropsychiatric disorders. Genome-wide analyses identified NLGN1 as a risk locus for suicide attempt across multiple ancestry populations 3, and gene-based testing revealed association with post-traumatic stress disorder, with SNP rs6779753 correlating with increased amygdala activation to fearful faces 4. NLGN1 mutations cause autism spectrum disorder 5. Beyond neurology, elevated NLGN1 expression predicts poor survival in colorectal cancer 6, and single-cell profiling identifies NLGN1-neurexin3 signaling in retinal Müller cells relevant to diabetic retinopathy pathogenesis 7. These findings establish NLGN1 as a multifunctional synaptic protein with broad implications for neuropsychiatric and neoplastic disease.

Sources cited
1
NLGN1 role in prefrontal cortex memory consolidation and excitatory/inhibitory balance in neuropsychiatric disorders
PMID: 29278843
2
PKA phosphorylation of NLGN1 at S839 dynamically regulates PSD-95 binding and synaptic localization
PMID: 31138690
3
NLGN1 identified as genome-wide significant risk locus for suicide attempt in multi-ancestry GWAS meta-analysis
PMID: 37777856
4
Gene-based association of NLGN1 with PTSD and correlation with amygdala activation to fearful faces
PMID: 27219346
5
NLGN1 mutations cause autism spectrum disorder; functional conservation across species
PMID: 22723984
6
Elevated NLGN1 expression predicts poor survival in colorectal cancer
PMID: 34340665
7
NLGN1-neurexin3 signaling pathway identified in retinal Müller cells relevant to diabetic retinopathy
PMID: 39504047
Disease Associationsⓘ21
type 2 diabetes mellitusOpen Targets
0.50Moderate
Abnormality of the skeletal systemOpen Targets
0.49Moderate
obesityOpen Targets
0.48Moderate
smoking initiationOpen Targets
0.45Moderate
major depressive disorderOpen Targets
0.43Moderate
insomniaOpen Targets
0.42Moderate
overnutritionOpen Targets
0.39Weak
atrial fibrillationOpen Targets
0.34Weak
PainOpen Targets
0.34Weak
migraine disorderOpen Targets
0.34Weak
HeadacheOpen Targets
0.34Weak
restless legs syndromeOpen Targets
0.33Weak
agingOpen Targets
0.33Weak
osteoarthritis, spineOpen Targets
0.33Weak
celiac diseaseOpen Targets
0.32Weak
type 1 diabetes mellitusOpen Targets
0.32Weak
diabetes mellitusOpen Targets
0.31Weak
lung cancerOpen Targets
0.31Weak
motion sicknessOpen Targets
0.28Weak
attention deficit hyperactivity disorderOpen Targets
0.27Weak
Autism 20UniProt
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
DLG2Protein interaction100%DLG3Protein interaction100%GRM5Protein interaction100%SPARCL1Protein interaction100%CASKProtein interaction100%DLGAP2Protein interaction100%
Tissue Expression6 tissues
Brain
100%
Heart
85%
Ovary
11%
Lung
2%
Liver
0%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
NLGN1DLG2DLG3GRM5SPARCL1CASKDLGAP2
PROTEIN STRUCTURE
Preparing viewer…
PDB5OJK · 2.55 Å · X-ray
View on RCSB ↗
RankingsWhere NLGN1 stands among ~20K protein-coding genes
  • #6,823of 20,598
    Most Researched69
Genes detectedNLGN1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Cross-disorder and disease-specific pathways in dementia revealed by single-cell genomics.
PMID: 39265576
Cell · 2024
1.00
2
GWAS Meta-Analysis of Suicide Attempt: Identification of 12 Genome-Wide Significant Loci and Implication of Genetic Risks for Specific Health Factors.
PMID: 37777856
Am J Psychiatry · 2023
0.90
3
NLGN1 and NLGN2 in the prefrontal cortex: their role in memory consolidation and strengthening.
PMID: 29278843
Curr Opin Neurobiol · 2018
0.80
4
Single-Cell Multiomics Profiling Reveals Heterogeneity of Müller Cells in the Oxygen-Induced Retinopathy Model.
PMID: 39504047
Invest Ophthalmol Vis Sci · 2024
0.70
5
Genome-wide gene-based analysis suggests an association between Neuroligin 1 (NLGN1) and post-traumatic stress disorder.
PMID: 27219346
Transl Psychiatry · 2016
0.60