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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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NOTCH2NLC
notch 2 N-terminal like C
Chromosome 1 · 1q21.2
NCBI Gene: 100996717Ensembl: ENSG00000286219.2HGNC: HGNC:53924UniProt: P0DPK4
28PubMed Papers
23Diseases
0Drugs
0Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingcerebral cortex developmentpositive regulation of Notch signaling pathwayextracellular regionneuronal intranuclear inclusion diseaseoculopharyngodistal myopathytremor, hereditary essential, 6oculopharyngodistal myopathy 3
✦AI Summary

NOTCH2NLC (notch 2 N-terminal like C) is a human-specific protein that promotes neural progenitor proliferation and evolutionary expansion of the brain neocortex by regulating the Notch signaling pathway 123. The protein enhances neural progenitor self-renewal by down-regulating neuronal differentiation genes, delaying differentiation and increasing overall neuronal production 2. NOTCH2NLC acts through dual mechanisms: enhancing Notch signaling non-cell-autonomously via direct interaction with NOTCH2, and promoting it cell-autonomously by inhibiting cis DLL1-NOTCH2 interactions 2. Pathologically, GGC repeat expansions in NOTCH2NLC cause multiple neurodegenerative disorders including neuronal intranuclear inclusion disease (NIID), oculopharyngodistal myopathy type 3 (OPDM3), and hereditary essential tremor 45. These expansions lead to toxic gain-of-function mechanisms involving polyglycine protein aggregation and RNA toxicity, with intranuclear inclusions containing mutant NOTCH2NLC-polyglycine protein and RNA-binding proteins like hnRNP A/B and MBNL1 56. The repeat expansions show regional prevalence in East Asian populations and exhibit genetic anticipation in familial cases 47. Long-read sequencing has improved diagnostic detection of these pathogenic expansions 8.

Sources cited
1
NOTCH2NLC is a human-specific protein that promotes neural progenitor proliferation and brain neocortex expansion
PMID: 29561261
2
NOTCH2NLC enhances neural progenitor self-renewal and acts through dual Notch signaling mechanisms
PMID: 29856954
3
NOTCH2NLC regulates Notch signaling pathway for brain development
PMID: 29856955
4
GGC repeat expansions in NOTCH2NLC cause neuronal intranuclear inclusion disease with genetic anticipation
PMID: 36150844
5
NOTCH2NLC GGC expansions cause oculopharyngodistal myopathy type 3 with toxic protein mechanisms
PMID: 33693509
6
Expanded NOTCH2NLC produces polyglycine inclusions and sequesters RNA-binding proteins
PMID: 36417528
7
NOTCH2NLC repeat expansions show regional prevalence in East Asian populations
PMID: 38709391
8
Long-read sequencing improves detection of NOTCH2NLC repeat expansions
PMID: 38406378
Disease Associationsⓘ23
neuronal intranuclear inclusion diseaseOpen Targets
0.50Moderate
oculopharyngodistal myopathyOpen Targets
0.46Moderate
tremor, hereditary essential, 6Open Targets
0.45Moderate
oculopharyngodistal myopathy 3Open Targets
0.33Weak
fragile X-associated tremor/ataxia syndromeOpen Targets
0.01Suggestive
myotonic dystrophy type 1Open Targets
0.01Suggestive
Alzheimer diseaseOpen Targets
0.01Suggestive
myotonic dystrophy type 2Open Targets
0.01Suggestive
amyotrophic lateral sclerosisOpen Targets
0.00Suggestive
distal hereditary motor neuropathyOpen Targets
0.00Suggestive
focal segmental glomerulosclerosisOpen Targets
0.00Suggestive
Retinal dystrophyOpen Targets
0.00Suggestive
LeukoencephalopathyOpen Targets
0.00Suggestive
adrenomyeloneuropathyOpen Targets
0.00Suggestive
Alpha-methylacyl-CoA racemase deficiencyOpen Targets
0.00Suggestive
cerebellar ataxiaOpen Targets
0.00Suggestive
fragile X syndromeOpen Targets
0.00Suggestive
Krabbe diseaseOpen Targets
0.00Suggestive
leukoencephalopathy with brain stem and spinal cord involvement-high lactate syndromeOpen Targets
0.00Suggestive
metachromatic leukodystrophyOpen Targets
0.00Suggestive
Neuronal intranuclear inclusion diseaseUniProt
Oculopharyngodistal myopathy 3UniProt
Tremor, hereditary essential 6UniProt
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
NOTCH2NLAShared pathway100%NOTCH2NLBShared pathway100%NBPF19Protein interaction79%LRP12Protein interaction63%CCDC85CShared pathway50%ENHOShared pathway33%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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NOTCH2NLCNOTCH2NLANOTCH2NLBNBPF19LRP12CCDC85CENHO
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt P0DPK4
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.92LoF Tolerant
pLIⓘ
0.06Tolerant
Observed/Expected LoF1.34 [0.44–1.92]
RankingsWhere NOTCH2NLC stands among ~20K protein-coding genes
  • #12,402of 20,598
    Most Researched28
  • #17,368of 17,882
    Most Constrained (LOEUF)1.92
Genes detectedNOTCH2NLC
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Long-read sequencing improves diagnostic rate in neuromuscular disorders.
PMID: 38406378
Acta Myol · 2023
1.00
2
Panorama of the distal myopathies.
PMID: 33458580
Acta Myol · 2020
0.90
3
Clinical features of
PMID: 36150844
J Neurol Neurosurg Psychiatry · 2022
0.80
4
Oculopharyngodistal myopathy.
PMID: 35942670
Curr Opin Neurol · 2022
0.70
5
Advances of NOTCH2NLC Repeat Expansions and Associated Diseases: A Bibliometric and Meta-analysis.
PMID: 38709391
Mol Neurobiol · 2024
0.60