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8 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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PABPC5
poly(A) binding protein cytoplasmic 5
Chromosome X · Xq21.31
NCBI Gene: 140886Ensembl: ENSG00000174740.8HGNC: HGNC:13629UniProt: Q96DU9
28PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingmRNA 3'-UTR bindingribonucleoprotein complexpoly(A) bindinggliomaataxia telangiectasianeoplasmastrocytoma
✦AI Summary

PABPC5 is a cytoplasmic poly(A) binding protein encoded on chromosome X.3 that binds the poly(A) tail of mRNA and participates in cytoplasmic RNA metabolism 1. The protein contains four RNA recognition motif domains and shares 60% amino acid identity with PABPC4 1. Beyond its canonical cytoplasmic localization, PABPC5 undergoes alternative translation initiation to generate a mitochondrial isoform that co-immunoprecipitates with mitochondrial poly(A) polymerase and is reduced upon mitochondrial DNA/RNA depletion, indicating a functional role in organellar RNA metabolism 2. PABPC5 expression is detected in fetal brain and multiple adult tissues 1. Disease relevance includes potential involvement in premature ovarian failure due to proximity to associated translocation breakpoints 1, and PABPC5 deletion has been associated with longer survival in ovarian cancer, possibly through effects on cellular immune response 3. DNA methylation alterations at PABPC5 have been identified in female Crohn's disease patients, suggesting X-linked disease manifestations 4. PABPC5 mutations have been identified as a candidate novel gene correlated with non-small cell lung cancer metastasis 5. However, functional characterization of PABPC5 in these disease contexts remains incomplete.

Sources cited
1
PABPC5 is a novel poly(A)-binding protein gene on chromosome Xq21.3 containing four RNA recognition motif domains, expressed in fetal brain and adult tissues, with potential relevance to premature ovarian failure
PMID: 11374897
2
PABPC5 undergoes alternative translation initiation to produce a mitochondrial isoform that associates with mitochondrial poly(A) polymerase and plays a role in mitochondrial RNA metabolism
PMID: 23275553
3
PABPC5 deletion in ovarian cancer is correlated with longer survival through effects on cellular immune response
PMID: 25875127
4
PABPC5 shows differential DNA methylation in female Crohn's disease patients on chromosome X
PMID: 27279921
5
PABPC5 mutations were identified as a novel gene candidate associated with non-small cell lung cancer metastasis
PMID: 34298439
Disease Associationsⓘ20
gliomaOpen Targets
0.07Suggestive
ataxia telangiectasiaOpen Targets
0.03Suggestive
neoplasmOpen Targets
0.02Suggestive
astrocytomaOpen Targets
0.01Suggestive
colorectal cancerOpen Targets
0.01Suggestive
myxosarcomaOpen Targets
0.01Suggestive
non-small cell lung carcinomaOpen Targets
0.00Suggestive
pancreatic adenocarcinomaOpen Targets
0.00Suggestive
viral diseaseOpen Targets
0.00Suggestive
endometrial carcinomaOpen Targets
0.00Suggestive
glioblastoma multiformeOpen Targets
0.00Suggestive
cancerOpen Targets
0.00Suggestive
aldosterone-producing adenomaOpen Targets
0.00Suggestive
ovarian cancerOpen Targets
0.00Suggestive
Sjogren syndromeOpen Targets
0.00Suggestive
hepatocellular carcinomaOpen Targets
0.00Suggestive
nonpapillary renal cell carcinomaOpen Targets
0.00Suggestive
sarcomaOpen Targets
0.00Suggestive
Testicular Germ Cell TumorOpen Targets
0.00Suggestive
Uterine CarcinosarcomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
EIF4A2Protein interaction99%PAIP2Protein interaction97%TGIF2LXProtein interaction94%TGIF2LYProtein interaction93%PABPN1Protein interaction93%EIF4G1Protein interaction80%
Tissue Expression6 tissues
Ovary
100%
Heart
51%
Brain
21%
Lung
13%
Liver
4%
Bone Marrow
1%
Gene Interaction Network
Click a node to explore
PABPC5EIF4A2PAIP2TGIF2LXTGIF2LYPABPN1EIF4G1
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q96DU9
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.94LoF Tolerant
pLIⓘ
0.14Tolerant
Observed/Expected LoF0.48 [0.26–0.94]
RankingsWhere PABPC5 stands among ~20K protein-coding genes
  • #12,409of 20,598
    Most Researched28
  • #8,779of 17,882
    Most Constrained (LOEUF)0.94
Genes detectedPABPC5
Sources retrieved8 papers
Response time—
📄 Sources
8▼
1
A novel poly(A)-binding protein gene (PABPC5) maps to an X-specific subinterval in the Xq21.3/Yp11.2 homology block of the human sex chromosomes.
PMID: 11374897
Genomics · 2001
1.00
2
The human-specific Yp11.2/Xq21.3 homology block encodes a potentially functional testis-specific TGIF-like retroposon.
PMID: 12226713
Mamm Genome · 2002
0.88
3
Alternative translation initiation augments the human mitochondrial proteome.
PMID: 23275553
Nucleic Acids Res · 2013
0.75
4
Microduplication of 15q13.3 and Xq21.31 in a family with Tourette syndrome and comorbidities.
PMID: 23894120
Am J Med Genet B Neuropsychiatr Genet · 2013
0.63
5
Tensor GSVD of patient- and platform-matched tumor and normal DNA copy-number profiles uncovers chromosome arm-wide patterns of tumor-exclusive platform-consistent alterations encoding for cell transformation and predicting ovarian cancer survival.
PMID: 25875127
PLoS One · 2015
0.50