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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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PALS1
protein associated with LIN7 1, MAGUK p55 family member
Chromosome 14 · 14q23.3
NCBI Gene: 64398Ensembl: ENSG00000072415.11HGNC: HGNC:18669UniProt: Q8N3R9
122PubMed Papers
20Diseases
0Drugs
1Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingprotein domain specific bindingidentical protein bindingmorphogenesis of an epithelial sheetCOVID-19severe acute respiratory syndromecomplex neurodevelopmental disorderAbnormal facial shape
✦AI Summary

PALS1 (protein associated with LIN7 1) is a scaffold protein and member of the p55 MAGUK family that plays a crucial role in establishing and maintaining epithelial cell polarity and tight junction formation 1. The protein functions as part of the evolutionary conserved CRUMBS/PALS1/PATJ polarity complex, which is essential for developing the apico-basal axis in epithelial cells 1. PALS1 contains a PDZ domain that mediates protein-protein interactions, particularly binding to the Crumbs (CRB) transmembrane protein through a gated access mechanism involving a key phenylalanine residue 2. In disease contexts, PALS1 serves as a tumor suppressor in colorectal cancer, where its downregulation correlates with poorer patient survival and increased metastasis through Rac1-dependent cell migration via Arf6 activation 3. Additionally, PALS1 acts as an interaction partner for SARS-CoV and SARS-CoV-2 envelope proteins, with SARS-CoV-2 showing higher binding affinity, potentially contributing to viral pathogenesis by disrupting tight junction formation and cell polarity 4. The protein also regulates solute carrier transporter expression in the kidney, and its haploinsufficiency leads to renal cysts and proteinuria 5.

Sources cited
1
PALS1 is part of the CRUMBS/PALS1/PATJ polarity complex essential for apico-basal axis development in epithelial cells
PMID: 18005931
2
PALS1 PDZ domain binds Crumbs protein through a gated access mechanism involving a key phenylalanine residue
PMID: 25760605
3
PALS1 downregulation in colorectal cancer correlates with poorer survival and increased metastasis through Rac1-dependent mechanisms
PMID: 33941200
4
PALS1 interacts with SARS-CoV and SARS-CoV-2 envelope proteins, with SARS-CoV-2 showing higher binding affinity
PMID: 33758649
5
PALS1 regulates solute carrier transporter expression in kidney and its haploinsufficiency causes renal pathology
PMID: 35252349
Disease Associationsⓘ20
COVID-19Open Targets
0.37Weak
severe acute respiratory syndromeOpen Targets
0.37Weak
complex neurodevelopmental disorderOpen Targets
0.37Weak
Abnormal facial shapeOpen Targets
0.34Weak
AnxietyOpen Targets
0.34Weak
arachnoid cystOpen Targets
0.34Weak
cerebral palsyOpen Targets
0.34Weak
Intellectual disabilityOpen Targets
0.34Weak
contact dermatitisOpen Targets
0.28Weak
pneumoconiosisOpen Targets
0.27Weak
spinal cord diseaseOpen Targets
0.27Weak
Neurodevelopmental disorderOpen Targets
0.15Weak
atypical Rett syndromeOpen Targets
0.12Weak
cystOpen Targets
0.06Suggestive
hepatocellular carcinomaOpen Targets
0.05Suggestive
colorectal cancerOpen Targets
0.04Suggestive
liver cancerOpen Targets
0.04Suggestive
cervical carcinomaOpen Targets
0.02Suggestive
colorectal carcinomaOpen Targets
0.02Suggestive
placenta praeviaOpen Targets
0.02Suggestive
Pathogenic Variants1
NM_022474.4(PALS1):c.1289A>G (p.Glu430Gly)Pathogenic
Anxiety;Abnormal facial shape;Arachnoid cyst;Cerebral palsy;Intellectual disability
★☆☆☆→ Residue 430
View on ClinVar ↗
Related Genes
PARD3Protein interaction100%MPDZProtein interaction100%AMOTProtein interaction100%CRB1Protein interaction100%LIN7AProtein interaction100%CDC42Protein interaction100%
Tissue Expression6 tissues
Brain
100%
Liver
46%
Heart
45%
Bone Marrow
40%
Lung
38%
Ovary
22%
Gene Interaction Network
Click a node to explore
PALS1PARD3MPDZAMOTCRB1LIN7ACDC42
PROTEIN STRUCTURE
Preparing viewer…
PDB4UU5 · 1.23 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.65LoF Tolerant
pLIⓘ
0.01Tolerant
Observed/Expected LoF0.47 [0.34–0.65]
RankingsWhere PALS1 stands among ~20K protein-coding genes
  • #3,861of 20,598
    Most Researched122 · top quartile
  • #4,831of 5,498
    Most Pathogenic Variants1
  • #4,666of 17,882
    Most Constrained (LOEUF)0.65
Genes detectedPALS1
Sources retrieved10 papers
Response time—
📄 Sources
10â–¼
1
Polarity complex proteins.
PMID: 18005931
Biochim Biophys Acta · 2008
1.00
2
Structures of the human Pals1 PDZ domain with and without ligand suggest gated access of Crb to the PDZ peptide-binding groove.
PMID: 25760605
Acta Crystallogr D Biol Crystallogr · 2015
0.90
3
Structural determinants driving the binding process between PDZ domain of wild type human PALS1 protein and SLiM sequences of SARS-CoV E proteins.
PMID: 33758649
Comput Struct Biotechnol J · 2021
0.80
4
Impact of Pals1 on Expression and Localization of Transporters Belonging to the Solute Carrier Family.
PMID: 35252349
Front Mol Biosci · 2022
0.70
5
A size filter at the Golgi regulates apical membrane protein sorting.
PMID: 39237743
Nat Cell Biol · 2024
0.60