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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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PAN3
poly(A) specific ribonuclease subunit PAN3
Chromosome 13 · 13q12.2
NCBI Gene: 255967Ensembl: ENSG00000152520.15HGNC: HGNC:29991UniProt: Q58A45
53PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly Constrained
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingPAN complexpoly(A)-specific ribonuclease activitynuclear-transcribed mRNA poly(A) tail shorteningneurodegenerative diseasehypothyroidismmyxedemagastritis
✦AI Summary

PAN3 is a regulatory subunit of the PAN2-PAN3 deadenylase complex that catalyzes initial poly(A) tail shortening, a rate-limiting step in mRNA degradation 1. PAN3 enhances PAN2 deadenylase activity and modulates mRNA stability globally through multiple decay pathways, including ARE-mediated, microRNA-mediated, and nonsense-mediated decay 2. Two PAN3 isoforms (Pan3S and Pan3L) display antagonistic functions: Pan3S more strongly enhances PAN2 activity through PABP interaction, while Pan3L suppresses it, coordinating biphasic deadenylation kinetics 2. PAN3 activity is required for efficient P-body formation, cytoplasmic processing bodies where mRNAs are translationally silenced and decayed 3. The complex specifically recognizes and processes long poly(A) tails characteristic of mammalian mRNAs through an extended substrate-binding path 4. Clinically, PAN3 dysregulation has emerged in acute lymphoblastic leukemia (ALL), where deletions downstream of PAN3 at 13q12.2 result in CDX2 enhancer hijacking, defining a high-risk B-ALL subtype in young adults characterized by treatment resistance and poor prognosis 56. These findings reveal PAN3 as a critical hub integrating mRNA decay with gene regulation and disease pathogenesis.

Sources cited
1
PAN2-PAN3 complex mediates deadenylation as rate-limiting step in mRNA degradation
PMID: 24450649
2
Two PAN3 isoforms have opposing effects on PAN2 activity, PABP interaction, and mRNA decay pathways
PMID: 28559491
3
Deadenylation and deadenylases are required for P-body formation and mRNA decay
PMID: 23224971
4
PAN2-PAN3 complex recognizes long poly(A) tails through extended substrate-binding path in mammals
PMID: 41275497
5
PAN3 enhancer hijacking via 13q12.2 deletion causes CDX2 deregulation in high-risk B-ALL
PMID: 35192684
6
CDX2/UBTF B-ALL from PAN3 enhancer hijacking shows poor treatment response and high relapse risk
PMID: 35316324
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.46Moderate
hypothyroidismOpen Targets
0.44Moderate
myxedemaOpen Targets
0.40Moderate
gastritisOpen Targets
0.24Weak
sinoatrial node disorderOpen Targets
0.24Weak
response to stimulusOpen Targets
0.09Suggestive
Hashimoto's thyroiditisOpen Targets
0.09Suggestive
neoplasmOpen Targets
0.09Suggestive
hepatocellular carcinomaOpen Targets
0.08Suggestive
chronic obstructive pulmonary diseaseOpen Targets
0.07Suggestive
cancerOpen Targets
0.05Suggestive
hemoglobin D diseaseOpen Targets
0.05Suggestive
Precordial painOpen Targets
0.05Suggestive
rheumatoid arthritisOpen Targets
0.04Suggestive
dominant beta-thalassemiaOpen Targets
0.04Suggestive
hemoglobin E diseaseOpen Targets
0.04Suggestive
Hemoglobin C - beta-thalassemiaOpen Targets
0.04Suggestive
hemoglobin C-beta-thalassemia syndromeOpen Targets
0.04Suggestive
ulcerative colitisOpen Targets
0.04Suggestive
hemoglobin H diseaseOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
PABPC1Protein interaction96%TNRC6CProtein interaction96%PAN2Protein interaction88%CNOT6LShared pathway50%CNOT2Shared pathway33%CNOT8Shared pathway33%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
44%
Lung
40%
Liver
28%
Heart
20%
Brain
16%
Gene Interaction Network
Click a node to explore
PAN3PABPC1TNRC6CPAN2CNOT6LCNOT2CNOT8
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q58A45
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.26Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.17 [0.11–0.26]
RankingsWhere PAN3 stands among ~20K protein-coding genes
  • #8,472of 20,598
    Most Researched53
  • #856of 17,882
    Most Constrained (LOEUF)0.26 · top 5%
Genes detectedPAN3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Roles of mRNA poly(A) tails in regulation of eukaryotic gene expression.
PMID: 34594027
Nat Rev Mol Cell Biol · 2022
1.00
2
Emerging molecular subtypes and therapies in acute lymphoblastic leukemia.
PMID: 37120350
Semin Diagn Pathol · 2023
0.90
3
mRNA deadenylation by Pan2-Pan3.
PMID: 24450649
Biochem Soc Trans · 2014
0.80
4
Enhancer retargeting of CDX2 and UBTF::ATXN7L3 define a subtype of high-risk B-progenitor acute lymphoblastic leukemia.
PMID: 35192684
Blood · 2022
0.70
5
Deadenylation and P-bodies.
PMID: 23224971
Adv Exp Med Biol · 2013
0.60