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9 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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REXO4
RNA exonuclease 4
Chromosome 9 · 9q34.2
NCBI Gene: 57109Ensembl: ENSG00000148300.13HGNC: HGNC:12820UniProt: B4DJ95
80PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
DNA Repair
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
DNA catabolic processsingle-stranded DNA bindingnucleolusRNA bindingbreast cancerSplenomegalycancerCOVID-19
✦AI Summary

REXO4 is a 3'-5' exonuclease that functions primarily in R-loop processing and ribosomal RNA metabolism. Its primary mechanism involves collaborating with RNaseH1 to degrade R-loops through an "endo/exo-cleavage coupling" mode, where REXO4 directly degrades RNA strands via its exonuclease activity while stimulating RNaseH1 endonuclease activity 1. REXO4 exhibits cell cycle-dependent subcellular localization, localizing to the nucleolus during interphase through an N-terminal nucleolar localization sequence and to perichromosomal regions of mitotic chr9 2. The protein associates with ribosomal components and is essential for rRNA processing and ribosome biogenesis, as REXO4 depletion causes G1/S cell cycle arrest and reduced viability 2. In disease contexts, REXO4 is overexpressed in human cancers, and REXO4-deficient tumors display elevated R-loop-associated mutation burden 1. REXO4 inhibition increases chemotherapeutic sensitivity to alkylating and G4-stabilizing drugs while activating cGAS-mediated antitumor immunity 1. Additionally, REXO4 variants have been identified in familial prolactinoma and female infertility cases 3, 4, suggesting broader roles in endocrine and reproductive function. REXO4 was also identified as a novel stress granule protein 5.

Sources cited
1
REXO4 collaborates with RNaseH1 in R-loop processing through endo/exo-cleavage coupling, and its inhibition increases chemotherapeutic sensitivity and activates antitumor immunity
PMID: 41706852
2
REXO4 exhibits cell cycle-dependent localization and is essential for rRNA processing, ribosome biogenesis, and cell cycle progression
PMID: 39829749
3
REXO4 is identified as a novel stress granule protein under various cellular stresses
PMID: 40198209
4
REXO4 variants are identified in familial isolated prolactinoma
PMID: 27245436
5
REXO4 variants are identified in women with primary infertility and recurrent pregnancy loss
PMID: 32172300
Disease Associationsⓘ20
breast cancerOpen Targets
0.04Suggestive
SplenomegalyOpen Targets
0.04Suggestive
cancerOpen Targets
0.04Suggestive
COVID-19Open Targets
0.04Suggestive
liver cancerOpen Targets
0.03Suggestive
hepatocellular carcinomaOpen Targets
0.03Suggestive
diffuse large B-cell lymphomaOpen Targets
0.01Suggestive
lymphoid neoplasmOpen Targets
0.01Suggestive
ThymomaOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
familial isolated pituitary adenomaOpen Targets
0.01Suggestive
Oppositional defiant disorderOpen Targets
0.00Suggestive
Uveal MelanomaOpen Targets
0.00Suggestive
infertilityOpen Targets
0.00Suggestive
tropical spastic paraparesisOpen Targets
0.00Suggestive
type 2 diabetes mellitusOpen Targets
0.00Suggestive
tuberous sclerosisOpen Targets
0.00Suggestive
cervical cancerOpen Targets
0.00Suggestive
ovarian serous cystadenocarcinomaOpen Targets
0.00Suggestive
urinary bladder cancerOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
WDR46Protein interaction95%GNL2Protein interaction94%RSL24D1Protein interaction88%DDX52Protein interaction88%REXO2Protein interaction85%NIP7Protein interaction84%
Tissue Expression6 tissues
Liver
100%
Ovary
88%
Brain
75%
Lung
62%
Heart
58%
Bone Marrow
46%
Gene Interaction Network
Click a node to explore
REXO4WDR46GNL2RSL24D1DDX52REXO2NIP7
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q9GZR2
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.95LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.68 [0.49–0.95]
RankingsWhere REXO4 stands among ~20K protein-coding genes
  • #5,959of 20,598
    Most Researched80
  • #8,830of 17,882
    Most Constrained (LOEUF)0.95
Genes detectedREXO4
Sources retrieved9 papers
Response time—
📄 Sources
9▼
1
Revealing Stress Granule Compositional Heterogeneity through Antibody-Guided Proximity Labeling.
PMID: 40198209
Anal Chem · 2025
1.00
2
R-loop processing via REXO4-RNaseH1-mediated endo- and exo-cleavage coupling mode prevents genome instability and antitumor immunity.
PMID: 41706852
Sci Adv · 2026
0.89
3
Human REXO4 is Required for Cell Cycle Progression.
PMID: 39829749
bioRxiv · 2025
0.78
4
Whole-exome identifies RXRG and TH germline variants in familial isolated prolactinoma.
PMID: 27245436
Cancer Genet · 2016
0.67
5
Effects of exogenous melatonin on expressional differences of immune-related genes in cashmere goats.
PMID: 36353099
Front Genet · 2022
0.56