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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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RP1L1
RP1 like 1
Chromosome 8 Β· 8p23.1
NCBI Gene: 94137Ensembl: ENSG00000183638.6HGNC: HGNC:15946UniProt: Q8IWN7
34PubMed Papers
22Diseases
0Drugs
48Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
photoreceptor cell maintenancephotoreceptor cell outer segment organizationphotoreceptor cell developmentaxoneme assemblyoccult macular dystrophyretinitis pigmentosa 88retinitis pigmentosaRetinal dystrophy
✦AI Summary

RP1L1 (RP1 like 1) is a photoreceptor cilium component essential for photoreceptor cell differentiation and maintenance 1. The protein plays a critical role in the organization of outer segments in both rod and cone photoreceptors, contributing to photoreceptor connecting cilium structure and axoneme assembly 1. RP1L1 pathogenic variants cause inherited photoreceptor diseases through disruption of ciliary function, though the exact molecular mechanisms remain unclear 1. The gene is primarily associated with two distinct retinal dystrophies: occult macular dystrophy (OMD), a cone degeneration characterized by progressive visual acuity loss with normal fundus appearance, and retinitis pigmentosa, a rod-predominant disease 21. Dominant mutations in RP1L1 have been identified in familial OMD cases, with structural changes detected in outer nuclear and photoreceptor layers via optical coherence tomography 2. In large-scale genetic studies, RP1L1 variants account for significant proportions of inherited eye diseases, with the gene ranking among the top causative genes for retinitis pigmentosa in Japanese populations and showing a 5.88% de novo mutation rate 34. Recent studies suggest RP1L1 may also contribute to age-related macular degeneration susceptibility and have complex interactions with other photoreceptor proteins that could modify disease phenotypes 51.

Sources cited
1
RP1L1 is a photoreceptor cilium component essential for photoreceptor biology
PMID: 32360662
2
RP1L1 dominant mutations cause occult macular dystrophy with progressive visual acuity loss
PMID: 25665791
3
RP1L1 variants are among the top causes of retinitis pigmentosa in Japanese populations
PMID: 31213501
4
RP1L1 shows 5.88% de novo mutation rate in inherited eye diseases
PMID: 36729443
5
RP1L1 polymorphisms may contribute to age-related macular degeneration susceptibility
PMID: 34865606
Disease Associationsβ“˜22
occult macular dystrophyOpen Targets
0.77Strong
retinitis pigmentosa 88Open Targets
0.68Moderate
retinitis pigmentosaOpen Targets
0.59Moderate
Retinal dystrophyOpen Targets
0.55Moderate
hypertensionOpen Targets
0.46Moderate
autosomal recessive retinitis pigmentosaOpen Targets
0.42Moderate
optic atrophyOpen Targets
0.38Weak
retinopathyOpen Targets
0.35Weak
alcohol drinkingOpen Targets
0.32Weak
Abnormality of the integumentOpen Targets
0.31Weak
mental or behavioural disorderOpen Targets
0.31Weak
diaphragmatic herniaOpen Targets
0.30Weak
type 1 diabetes nephropathyOpen Targets
0.30Weak
risk-taking behaviourOpen Targets
0.30Weak
Ulnar/fibula ray defect - brachydactylyOpen Targets
0.26Weak
ulnar/fibula ray defect-brachydactyly syndromeOpen Targets
0.26Weak
neurodegenerative diseaseOpen Targets
0.25Weak
atrophic gastritisOpen Targets
0.25Weak
type 2 diabetes mellitusOpen Targets
0.25Weak
genetic disorderOpen Targets
0.20Weak
Occult macular dystrophyUniProt
Retinitis pigmentosa 88UniProt
Pathogenic Variants48
NM_178857.6(RP1L1):c.133C>T (p.Arg45Trp)Pathogenic
Occult macular dystrophy|not provided|Retinal dystrophy|Retinitis pigmentosa 88|Optic atrophy
β˜…β˜…β˜†β˜†2025β†’ Residue 45
NM_178857.6(RP1L1):c.6530T>G (p.Leu2177Ter)Pathogenic
Retinitis pigmentosa 88|Occult macular dystrophy
β˜…β˜…β˜†β˜†2025β†’ Residue 2177
NM_178857.6(RP1L1):c.1189C>T (p.Arg397Ter)Pathogenic
Retinal dystrophy|Retinitis pigmentosa 88;Occult macular dystrophy|Occult macular dystrophy|Retinitis pigmentosa 88
β˜…β˜…β˜†β˜†2023β†’ Residue 397
NM_178857.6(RP1L1):c.1451del (p.Ser484fs)Pathogenic
Retinal dystrophy|Retinitis pigmentosa 88
β˜…β˜…β˜†β˜†2021β†’ Residue 484
NM_178857.6(RP1L1):c.2494C>T (p.Gln832Ter)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 832
NM_178857.6(RP1L1):c.1106G>A (p.Trp369Ter)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 369
NM_178857.6(RP1L1):c.2763del (p.Leu922fs)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 922
NM_178857.6(RP1L1):c.667G>T (p.Glu223Ter)Likely pathogenic
Retinitis pigmentosa 88
β˜…β˜†β˜†β˜†2024β†’ Residue 223
NM_178857.6(RP1L1):c.1270A>T (p.Lys424Ter)Likely pathogenic
RP1L1-related disorder|Retinitis pigmentosa
β˜…β˜†β˜†β˜†2024β†’ Residue 424
NM_178857.6(RP1L1):c.737C>G (p.Ser246Ter)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 246
NM_178857.6(RP1L1):c.4403dup (p.Ser1469fs)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 1469
NM_178857.6(RP1L1):c.603del (p.Lys203fs)Pathogenic
Retinitis pigmentosa 88|not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 203
NM_178857.6(RP1L1):c.2123C>A (p.Ser708Ter)Likely pathogenic
Retinitis pigmentosa 88
β˜…β˜†β˜†β˜†2024β†’ Residue 708
NM_178857.6(RP1L1):c.5154G>C (p.Thr1718=)Likely pathogenic
Retinal dystrophy
β˜…β˜†β˜†β˜†2023β†’ Residue 1718
NM_178857.6(RP1L1):c.3026_3029del (p.Ala1009fs)Likely pathogenic
Retinal dystrophy
β˜…β˜†β˜†β˜†2023β†’ Residue 1009
NM_178857.6(RP1L1):c.1779G>T (p.Thr593=)Likely pathogenic
Retinal dystrophy
β˜…β˜†β˜†β˜†2023β†’ Residue 593
NM_178857.6(RP1L1):c.1288C>T (p.Gln430Ter)Likely pathogenic
Retinal dystrophy
β˜…β˜†β˜†β˜†2023β†’ Residue 430
NM_178857.6(RP1L1):c.583C>T (p.Gln195Ter)Likely pathogenic
Retinal dystrophy
β˜…β˜†β˜†β˜†2023β†’ Residue 195
NM_178857.6(RP1L1):c.397G>T (p.Glu133Ter)Likely pathogenic
Retinal dystrophy
β˜…β˜†β˜†β˜†2023β†’ Residue 133
NM_178857.6(RP1L1):c.5438A>G (p.Asn1813Ser)Likely pathogenic
Retinal dystrophy
β˜…β˜†β˜†β˜†2023β†’ Residue 1813
View on ClinVar β†—
Related Genes
MSRAProtein interaction86%SOX7Protein interaction86%RP1Shared pathway50%DCXShared pathway38%CRXCo-mentioned in literature30%CDHR1Shared pathway23%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
55%
Heart
48%
Lung
46%
Ovary
33%
Liver
30%
Gene Interaction Network
Click a node to explore
RP1L1MSRASOX7RP1DCXCRXCDHR1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q8IWN7
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.94LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF1.63 [1.18–1.94]
RankingsWhere RP1L1 stands among ~20K protein-coding genes
  • #11,226of 20,598
    Most Researched34
  • #1,379of 5,498
    Most Pathogenic Variants48
  • #17,626of 17,882
    Most Constrained (LOEUF)1.94
Genes detectedRP1L1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Genetic characteristics of retinitis pigmentosa in 1204 Japanese patients.
PMID: 31213501
J Med Genet Β· 2019
1.00
2
De Novo Mutations Contributes Approximately 7% of Pathogenicity in Inherited Eye Diseases.
PMID: 36729443
Invest Ophthalmol Vis Sci Β· 2023
0.90
3
Clinical and genetic characteristics of 251 consecutive patients with macular and cone/cone-rod dystrophy.
PMID: 29555955
Sci Rep Β· 2018
0.80
4
Occult macular dystrophy.
PMID: 25665791
Jpn J Ophthalmol Β· 2015
0.70
5
PMID: 34865606
Ophthalmic Genet Β· 2022
0.60