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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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RP1
RP1 axonemal microtubule associated
Chromosome 8 Β· 8q11.23-q12.1
NCBI Gene: 6101Ensembl: ENSG00000104237.11HGNC: HGNC:10263UniProt: P56715
69PubMed Papers
21Diseases
0Drugs
335Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
photoreceptor connecting ciliumprotein bindingphotoreceptor inner segmentretinal cone cell developmentretinitis pigmentosaretinitis pigmentosa 1Retinal dystrophyautosomal recessive retinitis pigmentosa
✦AI Summary

RP1 (RP1 axonemal microtubule associated) is a microtubule-associated protein essential for photoreceptor cell development and maintenance. The protein regulates the stability and length of microtubule-based axonemes in photoreceptors and plays a critical role in organizing the outer segments of rod and cone photoreceptors, ensuring proper orientation and stacking of outer segment disks. RP1 mutations are a significant cause of inherited retinal diseases, particularly retinitis pigmentosa (RP). In Japanese populations, RP1 is among the six most frequently mutated genes causing RP, accounting for a substantial portion of cases 1. The gene shows population-specific variant patterns, with the c.2614dupC (p.Arg872fs) variant being particularly prevalent in Japanese patients with autosomal dominant RP 1. Additionally, RP1 variants, including c.5797C>T, are associated with autosomal recessive macular dystrophy and cone-rod dystrophy 2. Large-scale genetic studies consistently identify RP1 as responsible for 1.8-3% of inherited retinal disease cases 3 4. The protein's dysfunction leads to progressive retinal degeneration, making RP1 mutations clinically significant for genetic counseling and potential therapeutic interventions in retinal dystrophies.

Sources cited
1
RP1 is among the six most frequently mutated genes causing retinitis pigmentosa in Japanese populations, with p.Arg872fs being a prevalent autosomal dominant variant
PMID: 31213501
2
RP1 variants, particularly c.5797C>T, are associated with autosomal recessive macular dystrophy and cone-rod dystrophy
PMID: 36284460
3
RP1 mutations account for 1.8% of inherited retinal disease cases in a large Italian cohort
PMID: 36460718
4
RP1 shows population-specific founder variants and contributes significantly to inherited retinal diseases in Danish populations
PMID: 30718709
⚠Limited data available β€” This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜21
retinitis pigmentosaOpen Targets
0.82Strong
retinitis pigmentosa 1Open Targets
0.73Strong
Retinal dystrophyOpen Targets
0.60Moderate
autosomal recessive retinitis pigmentosaOpen Targets
0.52Moderate
RP1-related recessive retinopathyOpen Targets
0.52Moderate
genetic disorderOpen Targets
0.47Moderate
Cone rod dystrophyOpen Targets
0.46Moderate
cone-rod dystrophyOpen Targets
0.45Moderate
retinopathyOpen Targets
0.44Moderate
autosomal dominant retinitis pigmentosaOpen Targets
0.41Moderate
eye diseaseOpen Targets
0.41Moderate
brain aneurysmOpen Targets
0.39Weak
Rod-cone dystrophyOpen Targets
0.37Weak
Hyperlipoproteinemia type 4Open Targets
0.37Weak
retinal vascular disorderOpen Targets
0.31Weak
systemic lupus erythematosusOpen Targets
0.28Weak
metabolic diseaseOpen Targets
0.28Weak
aneurysmOpen Targets
0.23Weak
polyarteritis nodosaOpen Targets
0.21Weak
medical procedureOpen Targets
0.21Weak
Retinitis pigmentosa 1UniProt
Pathogenic Variants335
NM_006269.2(RP1):c.2574del (p.Val859fs)Pathogenic
not provided|Retinal dystrophy|Retinitis pigmentosa 1
β˜…β˜…β˜†β˜†2026β†’ Residue 859
NM_006269.2(RP1):c.2029C>T (p.Arg677Ter)Pathogenic
Retinitis pigmentosa 1|not provided|Retinal dystrophy|RP1-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 677
NM_006269.2(RP1):c.1625C>G (p.Ser542Ter)Pathogenic
not provided|Retinitis pigmentosa
β˜…β˜…β˜†β˜†2026β†’ Residue 542
NM_006269.2(RP1):c.2167G>T (p.Gly723Ter)Pathogenic
Retinitis pigmentosa|Retinal dystrophy|not provided|Retinitis pigmentosa 1
β˜…β˜…β˜†β˜†2026β†’ Residue 723
NM_006269.2(RP1):c.2374A>T (p.Lys792Ter)Pathogenic
not provided|Retinal dystrophy|RP1-related disorder|Cone-rod dystrophy
β˜…β˜…β˜†β˜†2026β†’ Residue 792
NM_006269.2(RP1):c.2749C>T (p.Gln917Ter)Pathogenic
Retinal dystrophy|Inborn genetic diseases|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 917
NM_006269.2(RP1):c.4582_4585del (p.Ile1528fs)Pathogenic
not provided|Retinitis pigmentosa 1
β˜…β˜…β˜†β˜†2025β†’ Residue 1528
NM_006269.2(RP1):c.2161del (p.Gly723fs)Pathogenic
not provided|Retinitis pigmentosa 1|Retinal dystrophy
β˜…β˜…β˜†β˜†2025β†’ Residue 723
NM_006269.2(RP1):c.2206dup (p.Thr736fs)Pathogenic
Retinitis pigmentosa|not provided|Retinitis pigmentosa 1
β˜…β˜…β˜†β˜†2025β†’ Residue 736
NM_006269.2(RP1):c.3157del (p.Tyr1053fs)Pathogenic
not provided|Retinitis pigmentosa 1|Retinal dystrophy
β˜…β˜…β˜†β˜†2025β†’ Residue 1053
NM_006269.2(RP1):c.668del (p.Gly223fs)Pathogenic
not provided|Retinal dystrophy|Retinitis pigmentosa 1|RP1-related recessive retinopathy
β˜…β˜…β˜†β˜†2025β†’ Residue 223
NM_006269.2(RP1):c.1719_1723del (p.Ser574fs)Pathogenic
not provided|Retinal dystrophy|Autosomal recessive retinitis pigmentosa|Retinitis pigmentosa
β˜…β˜…β˜†β˜†2025β†’ Residue 574
NM_006269.2(RP1):c.5017del (p.Tyr1673fs)Pathogenic
not provided|Retinal dystrophy|Retinitis pigmentosa 1
β˜…β˜…β˜†β˜†2025β†’ Residue 1673
NM_006269.2(RP1):c.2232T>A (p.Cys744Ter)Likely pathogenic
Retinal dystrophy|Retinal disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 744
NM_006269.2(RP1):c.2200del (p.Ser734fs)Pathogenic
Retinal dystrophy|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 734
NM_006269.2(RP1):c.2079del (p.Gly694fs)Pathogenic
Retinitis pigmentosa 1|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 694
NM_006269.2(RP1):c.1186C>T (p.Arg396Ter)Pathogenic
Retinitis pigmentosa|Retinal dystrophy|Retinitis pigmentosa 1|not provided|RP1-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 396
NM_006269.2(RP1):c.2656C>T (p.Gln886Ter)Pathogenic
Retinitis pigmentosa|Retinal dystrophy|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 886
NM_006269.2(RP1):c.2285_2289del (p.Leu762fs)Pathogenic
Retinitis pigmentosa 1|Retinitis pigmentosa|Retinal dystrophy|not provided|Retinal disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 762
NM_006269.2(RP1):c.2015dup (p.Lys673fs)Pathogenic
Retinitis pigmentosa 1|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 673
View on ClinVar β†—
Related Genes
RP1L1Shared pathway50%EYSCo-mentioned in literature30%DCXShared pathway23%PDE6BShared pathway23%NRLShared pathway20%USH2ACo-mentioned in literature20%
Tissue Expression6 tissues
Lung
100%
Ovary
19%
Bone Marrow
4%
Brain
4%
Heart
0%
Liver
0%
Gene Interaction Network
Click a node to explore
RP1RP1L1EYSDCXPDE6BNRLUSH2A
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt P56715
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.45LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.98 [0.67–1.45]
RankingsWhere RP1 stands among ~20K protein-coding genes
  • #6,838of 20,598
    Most Researched69
  • #177of 5,498
    Most Pathogenic Variants335 Β· top 5%
  • #14,831of 17,882
    Most Constrained (LOEUF)1.45
Genes detectedRP1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Genetic characteristics of retinitis pigmentosa in 1204 Japanese patients.
PMID: 31213501
J Med Genet Β· 2019
1.00
2
Genetic epidemiology of inherited retinal diseases in a large patient cohort followed at a single center in Italy.
PMID: 36460718
Sci Rep Β· 2022
0.90
3
Molecular genetic analysis using targeted NGS analysis of 677 individuals with retinal dystrophy.
PMID: 30718709
Sci Rep Β· 2019
0.80
4
Genetic characterization of 1210 Japanese pedigrees with inherited retinal diseases by whole-exome sequencing.
PMID: 36284460
Hum Mutat Β· 2022
0.70
5
RP1 Combined With Nivolumab in Advanced Anti-PD-1-Failed Melanoma (IGNYTE).
PMID: 40627813
J Clin Oncol Β· 2025
0.60