HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
50 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
SMARCA4
SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4
Chromosome 19 Β· 19p13.2
NCBI Gene: 6597Ensembl: ENSG00000127616.22HGNC: HGNC:11100UniProt: A0A2R8Y7S2
762PubMed Papers
23Diseases
0Drugs
325Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedHub GeneTranscription Factor
RESEARCH IMPACT
Highly StudiedTrendingVariant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
RNA polymerase I core promoter sequence-specific DNA bindingnucleosomal DNA bindingtranscription coregulator bindingp53 bindingintellectual disability, autosomal dominant 16rhabdoid tumor predisposition syndrome 2medulloblastomaCoffin-Siris syndrome
✦AI Summary

SMARCA4 encodes the central ATPase subunit of SWI/SNF chr19 remodeling complexes, functioning as a critical regulator of gene expression through ATP-dependent chr19 restructuring 1. The protein modulates nucleosome topology to enable transcriptional activation and repression, serving as both a tumor suppressor and developmental regulator 21. SMARCA4 is aberrantly expressed in approximately 5-10% of human malignancies, with particularly high frequencies in non-small cell lung cancer (NSCLC), where alterations are associated with poor prognosis and reduced chemotherapy response 23. Loss-of-function mutations (Class I) lead to tumor suppressor inactivation, while missense mutations (Class II) can have dominant-negative effects 1. SMARCA4-deficient tumors, including thoracic undifferentiated tumors and small cell carcinoma of the ovary hypercalcemic type, represent distinct aggressive entities with unique clinicopathological features 45. Germline variants cause hereditary conditions including rhabdoid tumor predisposition syndrome-2 and Coffin-Siris syndrome 1. Therapeutically, SMARCA4 alterations predict resistance to conventional therapies but may respond to immune checkpoint inhibitors and targeted approaches including synthetic lethal strategies 167.

Sources cited
1
SMARCA4 is ATPase subunit of SWI/SNF complex, tumor suppressor aberrant in 5-7% of malignancies, causes hereditary syndromes
PMID: 34642211
2
SMARCA4 aberrant in ~10% NSCLCs, regulates gene expression/transcription, associated with poor prognosis
PMID: 36450331
3
SMARCA4 alterations highly prevalent in NSCLC, associated with reduced survival, missense mutations reduce remodeling activity
PMID: 33144586
4
SMARCA4-deficient thoracic tumors represent undifferentiated carcinomas with unique clinicopathological characteristics
PMID: 31751681
5
Thoracic SMARCA4-deficient tumors recognized as separate entity, may respond to immunotherapy
PMID: 38542211
6
SMARCA4-deficient NSCLC associated with worse prognosis, may respond to immunotherapy combined with chemotherapy
PMID: 37184108
7
SMARCA4 deletions associated with worse outcomes in chemoimmunotherapy, comparable to mutations
PMID: 39864548
Disease Associationsβ“˜23
intellectual disability, autosomal dominant 16Open Targets
0.80Strong
rhabdoid tumor predisposition syndrome 2Open Targets
0.79Strong
medulloblastomaOpen Targets
0.59Moderate
Coffin-Siris syndromeOpen Targets
0.58Moderate
hereditary neoplastic syndromeOpen Targets
0.57Moderate
Inherited cancer-predisposing syndromeOpen Targets
0.57Moderate
lung adenocarcinomaOpen Targets
0.56Moderate
non-small cell lung carcinomaOpen Targets
0.54Moderate
neurodegenerative diseaseOpen Targets
0.54Moderate
Burkitts lymphomaOpen Targets
0.53Moderate
head and neck squamous cell carcinomaOpen Targets
0.52Moderate
Intellectual disabilityOpen Targets
0.49Moderate
genetic disorderOpen Targets
0.49Moderate
Ovarian Small Cell CarcinomaOpen Targets
0.47Moderate
otosclerosis 12Open Targets
0.47Moderate
familial rhabdoid tumorOpen Targets
0.46Moderate
esophageal cancerOpen Targets
0.45Moderate
Coffin-Siris syndrome 1Open Targets
0.40Weak
colorectal adenocarcinomaOpen Targets
0.40Weak
gastric carcinomaOpen Targets
0.38Weak
Coffin-Siris syndrome 4UniProt
Otosclerosis 12UniProt
Rhabdoid tumor predisposition syndrome 2UniProt
Pathogenic Variants325
NM_003072.5(SMARCA4):c.229G>T (p.Glu77Ter)Pathogenic
Rhabdoid tumor predisposition syndrome 2
β˜…β˜…β˜†β˜†2026β†’ Residue 77
NM_003072.5(SMARCA4):c.788dup (p.Gly264fs)Pathogenic
not provided|Rhabdoid tumor predisposition syndrome 2
β˜…β˜…β˜†β˜†2026β†’ Residue 264
NM_003072.5(SMARCA4):c.493C>T (p.Gln165Ter)Pathogenic
Rhabdoid tumor predisposition syndrome 2|Hereditary cancer-predisposing syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 165
NM_003072.5(SMARCA4):c.2032C>T (p.Gln678Ter)Pathogenic
Hereditary cancer-predisposing syndrome|Rhabdoid tumor predisposition syndrome 2
β˜…β˜…β˜†β˜†2025β†’ Residue 678
NM_003072.5(SMARCA4):c.2998_2999del (p.Met1000fs)Pathogenic
Hereditary cancer-predisposing syndrome|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 1000
NM_003072.5(SMARCA4):c.3565C>T (p.Arg1189Ter)Pathogenic
Rhabdoid tumor predisposition syndrome 2|not provided|Hereditary cancer-predisposing syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 1189
NM_003072.5(SMARCA4):c.579del (p.Gln194fs)Pathogenic
Rhabdoid tumor predisposition syndrome 2|Hereditary cancer-predisposing syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 194
NM_003072.5(SMARCA4):c.1757_1760del (p.Lys586fs)Pathogenic
not provided|Rhabdoid tumor predisposition syndrome 2|Anophthalmia-microphthalmia syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 586
NM_003072.5(SMARCA4):c.2438+1G>APathogenic
Rhabdoid tumor predisposition syndrome 2|Hereditary cancer-predisposing syndrome
β˜…β˜…β˜†β˜†2025
NM_003072.5(SMARCA4):c.3608G>A (p.Arg1203His)Pathogenic
not provided|Intellectual disability, autosomal dominant 16|SMARCA4-related BAFopathy
β˜…β˜…β˜†β˜†2025β†’ Residue 1203
NM_003072.5(SMARCA4):c.3559C>T (p.Gln1187Ter)Pathogenic
Hereditary cancer-predisposing syndrome|Rhabdoid tumor predisposition syndrome 2
β˜…β˜…β˜†β˜†2025β†’ Residue 1187
NM_003072.5(SMARCA4):c.1943+1G>ALikely pathogenic
Rhabdoid tumor predisposition syndrome 2|Hereditary cancer-predisposing syndrome
β˜…β˜…β˜†β˜†2025
NM_003072.5(SMARCA4):c.3216-2A>GLikely pathogenic
Rhabdoid tumor predisposition syndrome 2
β˜…β˜…β˜†β˜†2025
NM_003072.5(SMARCA4):c.3229C>T (p.Arg1077Ter)Pathogenic
Hereditary cancer-predisposing syndrome|Rhabdoid tumor predisposition syndrome 2|Neoplasm|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 1077
NM_003072.5(SMARCA4):c.2783del (p.Leu928fs)Pathogenic
Rhabdoid tumor predisposition syndrome 2
β˜…β˜…β˜†β˜†2025β†’ Residue 928
NM_003072.5(SMARCA4):c.3546+1G>ALikely pathogenic
Rhabdoid tumor predisposition syndrome 2|Hereditary cancer-predisposing syndrome
β˜…β˜…β˜†β˜†2025
NM_003072.5(SMARCA4):c.3216-1G>CLikely pathogenic
Rhabdoid tumor predisposition syndrome 2|Hereditary cancer-predisposing syndrome
β˜…β˜…β˜†β˜†2025
NM_003072.5(SMARCA4):c.2936G>A (p.Arg979Gln)Pathogenic
not specified|Rhabdoid tumor predisposition syndrome 2;Intellectual disability, autosomal dominant 16|Intellectual disability, autosomal dominant 16|Cleft palate|not provided|SMARCA4-related BAFopathy|Hereditary cancer-predisposing syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 979
NM_003072.5(SMARCA4):c.2935C>T (p.Arg979Ter)Pathogenic
Rhabdoid tumor predisposition syndrome 2|not provided|Hereditary cancer-predisposing syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 979
NM_003072.5(SMARCA4):c.3910C>T (p.Gln1304Ter)Pathogenic
Rhabdoid tumor predisposition syndrome 2|not provided|Hereditary cancer-predisposing syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 1304
View on ClinVar β†—
Related Genes
NKX2-5Protein interaction100%PPARGProtein interaction100%DPF1Protein interaction100%DPF3Protein interaction100%H3-4Protein interaction100%H3C12Protein interaction100%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
88%
Lung
63%
Ovary
57%
Heart
42%
Liver
40%
Gene Interaction Network
Click a node to explore
SMARCA4NKX2-5PPARGDPF1DPF3H3-4H3C12
PROTEIN STRUCTURE
Preparing viewer…
PDB7TAB Β· 1.16 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.23Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.17 [0.13–0.23]
RankingsWhere SMARCA4 stands among ~20K protein-coding genes
  • #264of 20,598
    Most Researched762 Β· top 5%
  • #183of 5,498
    Most Pathogenic Variants325 Β· top 5%
  • #608of 17,882
    Most Constrained (LOEUF)0.23 Β· top 5%
Genes detectedSMARCA4
Sources retrieved50 papers
Response timeβ€”
πŸ“„ Sources
50β–Ό
1
SMARCA4: Current status and future perspectives in non-small-cell lung cancer.
PMID: 36450331
Cancer Lett Β· 2023
1.00
2
PMID: 34642211
Mol Cancer Ther Β· 2021
0.90
3
SMARCA4 is a haploinsufficient B cell lymphoma tumor suppressor that fine-tunes centrocyte cell fate decisions.
PMID: 38458188
Cancer Cell Β· 2024
0.82
4
Functional characterization of SMARCA4 variants identified by targeted exome-sequencing of 131,668 cancer patients.
PMID: 33144586
Nat Commun Β· 2020
0.80
5
Selective PROTAC-mediated degradation of SMARCA2 is efficacious in SMARCA4 mutant cancers.
PMID: 36357397
Nat Commun Β· 2022
0.78