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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SMG7
SMG7 nonsense mediated mRNA decay factor
Chromosome 1 · 1q25.3
NCBI Gene: 9887Ensembl: ENSG00000116698.22HGNC: HGNC:16792UniProt: A0A8I5KSL3
92PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingtelomeric repeat DNA bindingprotein phosphatase 2A bindingnucleussystemic lupus erythematosusCOVID-19ovarian neoplasmacute tonsillitis
✦AI Summary

SMG7 is a core component of the nonsense-mediated mRNA decay (NMD) pathway, functioning as an adapter protein that recruits UPF1 to mRNA degradation sites. In NMD, SMG7 forms a functional complex with SMG5 that recognizes phosphorylated UPF1 through its 14-3-3-like domain 1, enabling access to mRNA degradation machinery. SMG7 operates through two mechanistic pathways: it facilitates exonucleolytic decay by linking UPF1 to the CCR4-NOT deadenylase complex 2, and enables endonucleolytic activity of SMG6 through a two-factor authentication model where SMG5-SMG7 presence is required for SMG6 activation 3. SMG7 targets not only aberrant mRNAs with premature stop codons but also 3%-10% of normal mRNAs, particularly those with 3'UTR introns, upstream open reading frames, and long 3'UTRs 4. Beyond NMD, SMG7 exhibits DNA damage response functions, playing a critical role in ATR-CHK1 axis activation by stabilizing the 9-1-1 checkpoint complex during genotoxic stress 5. Clinically, dysregulation of SMG7-AS1 (an associated long noncoding RNA) correlates with melanoma progression and immunotherapy response 6. SMG7 demonstrates functional redundancy with SMG5, with either protein sufficient to activate NMD 3.

Sources cited
1
SMG7's 14-3-3-like domain recognizes phosphorylated UPF1 C-terminus as a heterodimer with SMG5
PMID: 25013172
2
SMG7 recruits CCR4-NOT deadenylase complex for miRNA-mediated mRNA decay
PMID: 31519907
3
SMG5-SMG7 are required to activate SMG6 endonucleolytic activity; either SMG5 or SMG7 alone is sufficient
PMID: 34172724
4
SMG7 targets 3%-10% of mRNAs including those with 3'UTR introns, uORFs, and long 3'UTRs
PMID: 27864472
5
SMG7 plays critical role in ATR-CHK1 DNA damage checkpoint through RAD17 interaction
PMID: 33820915
6
SMG7-AS1 dysregulation associates with melanoma progression and immunotherapy response
PMID: 36931476
7
SMG5-SMG7 complex functions in exonucleolytic NMD pathway; functionally distinct from PNRC2
PMID: 29348139
Disease Associationsⓘ20
systemic lupus erythematosusOpen Targets
0.28Weak
COVID-19Open Targets
0.28Weak
ovarian neoplasmOpen Targets
0.20Weak
acute tonsillitisOpen Targets
0.18Weak
neurodegenerative diseaseOpen Targets
0.13Weak
Neurodevelopmental abnormalityOpen Targets
0.11Weak
smoking initiationOpen Targets
0.10Weak
neoplasmOpen Targets
0.08Suggestive
cancerOpen Targets
0.04Suggestive
subarachnoid hemorrhageOpen Targets
0.03Suggestive
prostate cancerOpen Targets
0.02Suggestive
infectionOpen Targets
0.01Suggestive
telomere syndromeOpen Targets
0.01Suggestive
ulcerative colitisOpen Targets
0.01Suggestive
fibrosarcomaOpen Targets
0.01Suggestive
infertilityOpen Targets
0.01Suggestive
viral diseaseOpen Targets
0.01Suggestive
rhabdomyosarcomaOpen Targets
0.01Suggestive
ataxia telangiectasiaOpen Targets
0.01Suggestive
cutaneous melanomaOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
UPF3AProtein interaction99%SMG9Protein interaction94%PABPC1Protein interaction93%STAU1Protein interaction92%UPF3BProtein interaction90%XRN1Protein interaction88%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
79%
Ovary
51%
Heart
49%
Lung
47%
Liver
46%
Gene Interaction Network
Click a node to explore
SMG7UPF3ASMG9PABPC1STAU1UPF3BXRN1
PROTEIN STRUCTURE
Preparing viewer…
PDB1YA0 · 2.55 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.37Moderately Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.28 [0.21–0.37]
RankingsWhere SMG7 stands among ~20K protein-coding genes
  • #5,216of 20,598
    Most Researched92
  • #1,722of 17,882
    Most Constrained (LOEUF)0.37 · top 10%
Genes detectedSMG7
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Dissecting the functions of SMG5, SMG7, and PNRC2 in nonsense-mediated mRNA decay of human cells.
PMID: 29348139
RNA · 2018
1.00
2
UPF1/SMG7-dependent microRNA-mediated gene regulation.
PMID: 31519907
Nat Commun · 2019
0.90
3
SMG7-AS1 as a prognostic biomarker and predictor of immunotherapy responses for skin cutaneous melanoma.
PMID: 36931476
Genomics · 2023
0.80
4
Saccharomyces cerevisiae Ebs1p is a putative ortholog of human Smg7 and promotes nonsense-mediated mRNA decay.
PMID: 17984081
Nucleic Acids Res · 2007
0.70
5
Transcriptome-wide identification of NMD-targeted human mRNAs reveals extensive redundancy between SMG6- and SMG7-mediated degradation pathways.
PMID: 27864472
RNA · 2017
0.60