HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
SNAP47
synaptosome associated protein 47
Chromosome 1 · 1q42.13
NCBI Gene: 116841Ensembl: ENSG00000143740.15HGNC: HGNC:30669UniProt: A0A087X0B7
52PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingBLOC-1 complexsyntaxin bindingexocytosisAbnormality of the skeletal systemneurodegenerative diseasebronchial diseaseHyperhidrosis
✦AI Summary

SNAP47 is a SNARE protein containing dual Qb and Qc domains that mediates intracellular membrane fusion, particularly in autophagy-lysosomal pathways 1. As a member of the SNAP-25 protein family, SNAP47 functions distinctly from other family members, unable to cross-rescue SNAP-25 or SNAP-23 functions 1. Mechanistically, SNAP47 is recruited to autophagosomes via its Pleckstrin homology domain, which detects ATG8s and PI(4,5)P2 2. SNAP47 forms the STX17-SNAP47-VAMP7/VAMP8 SNARE complex, the default machinery mediating autophagosome-lysosome fusion in both selective autophagy under non-starvation conditions and starvation-induced bulk autophagy 2. Notably, deacetylated SNAP47 recruits HOPS components to facilitate fusion independently of STX17 interactions, while acetylation by CBP inhibits this process, with deacetylation by HDAC2 restoring function 3. Additionally, SNAP47 promotes viral replication through interactions with ATG14 and facilitates CVB3 propagation via VP1 capsid assembly 4. Clinically, SNAP47 loss correlates with cognitive decline in neurodegenerative diseases including Alzheimer's disease, Parkinson's disease dementia, and dementia with Lewy bodies 5, with synaptic SNAP47 levels predicting disease severity 6. In cancer, circular RNA-derived SNAP47 dysregulation contributes to chemoresistance in lung cancer 7, while SPIB-mediated SNAP47 activation promotes anoikis resistance 8.

Sources cited
1
SNAP47 is a SNARE protein containing dual Qb and Qc domains that mediates intracellular membrane fusion, particularly in autophagy-lysosomal pathways .
PMID: 30267828
2
Mechanistically, SNAP47 is recruited to autophagosomes via its Pleckstrin homology domain, which detects ATG8s and PI(4,5)P2 .
PMID: 38182888
3
Notably, deacetylated SNAP47 recruits HOPS components to facilitate fusion independently of STX17 interactions, while acetylation by CBP inhibits this process, with deacetylation by HDAC2 restoring function .
PMID: 39788987
4
Additionally, SNAP47 promotes viral replication through interactions with ATG14 and facilitates CVB3 propagation via VP1 capsid assembly .
PMID: 34440910
5
Clinically, SNAP47 loss correlates with cognitive decline in neurodegenerative diseases including Alzheimer's disease, Parkinson's disease dementia, and dementia with Lewy bodies , with synaptic SNAP47 levels predicting disease severity .
PMID: 29324989
6
Clinically, SNAP47 loss correlates with cognitive decline in neurodegenerative diseases including Alzheimer's disease, Parkinson's disease dementia, and dementia with Lewy bodies , with synaptic SNAP47 levels predicting disease severity .
PMID: 39711511
7
In cancer, circular RNA-derived SNAP47 dysregulation contributes to chemoresistance in lung cancer , while SPIB-mediated SNAP47 activation promotes anoikis resistance .
PMID: 34664776
8
In cancer, circular RNA-derived SNAP47 dysregulation contributes to chemoresistance in lung cancer , while SPIB-mediated SNAP47 activation promotes anoikis resistance .
PMID: 32129936
Disease Associationsⓘ20
Abnormality of the skeletal systemOpen Targets
0.42Moderate
neurodegenerative diseaseOpen Targets
0.31Weak
bronchial diseaseOpen Targets
0.28Weak
HyperhidrosisOpen Targets
0.27Weak
carpal tunnel syndromeOpen Targets
0.13Weak
lymphatic system diseaseOpen Targets
0.13Weak
Varicose veinsOpen Targets
0.11Weak
vein disorderOpen Targets
0.11Weak
chondromalaciaOpen Targets
0.10Weak
osteoarthritis, handOpen Targets
0.09Suggestive
melorheostosisOpen Targets
0.04Suggestive
melorheostosis with osteopoikilosisOpen Targets
0.04Suggestive
proliferative diabetic retinopathyOpen Targets
0.03Suggestive
placenta praeviaOpen Targets
0.03Suggestive
12q14 microdeletion syndromeOpen Targets
0.03Suggestive
Dentin dysplasia - sclerotic bonesOpen Targets
0.03Suggestive
dentin dysplasia-sclerotic bones syndromeOpen Targets
0.03Suggestive
osteomesopyknosisOpen Targets
0.03Suggestive
osteosclerotic metaphyseal dysplasiaOpen Targets
0.03Suggestive
pyknoachondrogenesisOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
STX6Protein interaction100%STX16Protein interaction100%VTI1BProtein interaction98%STX5Protein interaction91%VAMP5Protein interaction91%STX2Protein interaction88%
Tissue Expression6 tissues
Heart
100%
Ovary
100%
Brain
69%
Liver
48%
Lung
27%
Bone Marrow
21%
Gene Interaction Network
Click a node to explore
SNAP47STX6STX16VTI1BSTX5VAMP5STX2
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q5SQN1
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.83LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.57 [0.40–0.83]
RankingsWhere SNAP47 stands among ~20K protein-coding genes
  • #8,612of 20,598
    Most Researched52
  • #7,027of 17,882
    Most Constrained (LOEUF)0.83
Genes detectedSNAP47
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
The STX17-SNAP47-VAMP7/VAMP8 complex is the default SNARE complex mediating autophagosome-lysosome fusion.
PMID: 38182888
Cell Res · 2024
1.00
2
Deacetylated SNAP47 recruits HOPS to facilitate autophagosome-lysosome fusion independent of STX17.
PMID: 39788987
Nat Commun · 2025
0.90
3
SNAP47 Interacts with ATG14 to Promote VP1 Conjugation and CVB3 Propagation.
PMID: 34440910
Cells · 2021
0.80
4
Circ-SNAP47 (hsa_circ_0016760) and miR-625-5p are regulators of WEE1 in regulation of chemoresistance, growth and invasion of DDP-tolerant NSCLC cells via ceRNA pathway.
PMID: 34664776
Environ Toxicol · 2022
0.70
5
Proteomic signatures of Alzheimer's disease and Lewy body dementias: A comparative analysis.
PMID: 39711511
Alzheimers Dement · 2025
0.60