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7 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SNAPC5
small nuclear RNA activating complex polypeptide 5
Chromosome 15 · 15q22.31
NCBI Gene: 10302Ensembl: ENSG00000174446.13HGNC: HGNC:15484UniProt: O75971
24PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
RNA polymerase III general transcription initiation factor activityprotein bindingRNA polymerase II general transcription initiation factor activitysnRNA transcription by RNA polymerase IIrasopathycardiofaciocutaneous syndrome 3Abnormality of the cardiovascular systemmelorheostosis
✦AI Summary

SNAPC5 is a subunit of the snRNA Activating Protein Complex (SNAPc), a multifunctional basal transcription factor required for transcription of both RNA polymerase II and III small nuclear RNA genes 1. SNAPC5 functions as part of the SNAPc complex to bind the proximal sequence element (PSE), a non-TATA-box core promoter element, and recruit transcription factors including TBP and BRF2 to establish pre-initiation complexes 2. Structurally, SNAPC5 is positioned near promoter DNA within the Pol III pre-initiation complex assembled on U6 snRNA promoters, as revealed by cryo-EM and crosslinking mass spectrometry, with distinct mechanisms enabling SNAPc engagement across both polymerase types 3. Beyond its canonical transcription function, SNAPC5 has emerged as a disease-relevant gene in cancer biology. It was identified as one of five cancer-dependent genes in a prognostic signature for colon cancer, where high expression correlated with worse survival outcomes and reduced chemotherapy response 4. Additionally, a long non-coding RNA derived from the SNAPC5 locus (lnc-SNAPC5-3:4) was discovered in plasma exosomes as a potential biomarker for monitoring anlotinib treatment efficacy in advanced non-small cell lung cancer, with upregulation indicating treatment response 5. SNAPC5 was also identified among co-expressed genes associated with glioma pathogenesis in transcriptomic analyses 6, suggesting broader clinical relevance in malignant brain tumors.

Sources cited
1
SNAPC5 is localized near promoter DNA in Pol III pre-initiation complexes and participates in SNAPc-mediated polymerase recruitment mechanisms
PMID: 39747245
2
SNAPC5 (SNAP19) is a core subunit of SNAPc complex required for PSE binding and directing both Pol II and Pol III snRNA gene transcription
PMID: 9732265
3
SNAPC5 participates in subunit-subunit interactions within SNAPc for PSE-specific binding and recruitment of transcription factors
PMID: 11056176
4
SNAPC5 is one of five cancer-dependent genes in a prognostic signature for colon cancer with association to worse survival and reduced chemotherapy response
PMID: 37441804
5
Plasma exosomal lnc-SNAPC5-3:4 is upregulated upon anlotinib treatment response in advanced NSCLC and serves as a potential treatment efficacy biomarker
PMID: 35672525
6
SNAPC5 identified among co-expressed genes crucial to glioma biological processes and pathogenesis
PMID: 39833228
Disease Associationsⓘ20
rasopathyOpen Targets
0.19Weak
cardiofaciocutaneous syndrome 3Open Targets
0.18Weak
Abnormality of the cardiovascular systemOpen Targets
0.17Weak
melorheostosisOpen Targets
0.17Weak
Noonan syndromeOpen Targets
0.16Weak
cardiofaciocutaneous syndromeOpen Targets
0.16Weak
Noonan syndrome and Noonan-related syndromeOpen Targets
0.15Weak
refractive errorOpen Targets
0.08Suggestive
non-small cell lung carcinomaOpen Targets
0.08Suggestive
neoplasmOpen Targets
0.06Suggestive
prostate carcinomaOpen Targets
0.03Suggestive
mathematical abilityOpen Targets
0.03Suggestive
prostate cancerOpen Targets
0.02Suggestive
Testicular Germ Cell TumorOpen Targets
0.02Suggestive
upper respiratory tract disorderOpen Targets
0.02Suggestive
Abruptio PlacentaeOpen Targets
0.02Suggestive
insomniaOpen Targets
0.02Suggestive
chronic obstructive pulmonary diseaseOpen Targets
0.02Suggestive
systemic juvenile idiopathic arthritisOpen Targets
0.01Suggestive
gliomaOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
POLR3DProtein interaction100%TBPProtein interaction99%GTF2BProtein interaction96%GTF2A2Protein interaction90%GTF2A1Protein interaction90%SNAPC3Protein interaction85%
Tissue Expression6 tissues
Heart
100%
Brain
62%
Liver
62%
Lung
40%
Ovary
40%
Bone Marrow
29%
Gene Interaction Network
Click a node to explore
SNAPC5POLR3DTBPGTF2BGTF2A2GTF2A1SNAPC3
PROTEIN STRUCTURE
Preparing viewer…
PDB7ZWD · 3.00 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.81LoF Tolerant
pLIⓘ
0.01Tolerant
Observed/Expected LoF1.01 [0.52–1.81]
RankingsWhere SNAPC5 stands among ~20K protein-coding genes
  • #13,314of 20,598
    Most Researched24
  • #16,632of 17,882
    Most Constrained (LOEUF)1.81
Genes detectedSNAPC5
Sources retrieved7 papers
Response time—
📄 Sources
7▼
1
Structural insights into distinct mechanisms of RNA polymerase II and III recruitment to snRNA promoters.
PMID: 39747245
Nat Commun · 2025
1.00
2
Brain gliomas new transcriptomic discoveries from differentially expressed genes to therapeutic targets.
PMID: 39833228
Sci Rep · 2025
0.86
3
Exploring Cancer Dependency Map genes and immune subtypes in colon cancer, in which
PMID: 37441804
Aging (Albany NY) · 2023
0.71
4
The role of plasma exosomal lnc-SNAPC5-3:4 in monitoring the efficacy of anlotinib in the treatment of advanced non-small cell lung cancer.
PMID: 35672525
J Cancer Res Clin Oncol · 2022
0.57
5
A map of protein-protein contacts within the small nuclear RNA-activating protein complex SNAPc.
PMID: 11056176
J Biol Chem · 2001
0.43