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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SNUPN
snurportin 1
Chromosome 15 · 15q24.2
NCBI Gene: 10073Ensembl: ENSG00000169371.15HGNC: HGNC:14245UniProt: O95149
40PubMed Papers
21Diseases
0Drugs
2Pathogenic Variants
FUNCTIONAL ROLE
Transporter
CLINICAL
OMIM Disease Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleusprotein bindingcytosolRNA import into nucleusmuscular dystrophy, limb-girdle, autosomal recessive 29Abnormality of the skeletal systemSNUPN-related muscular dystrophy with or without multi-system involvementtype 2 diabetes mellitus
✦AI Summary

SNUPN encodes snurportin-1, a nuclear import adapter that mediates trimethylguanosine (m3G)-cap-dependent nuclear import of U snRNPs, essential spliceosomal components 1. The protein binds specifically to m3G-capped U snRNAs and functions through oligomerization and interaction with importin-β to facilitate snRNP nuclear transport 23. Biallelic SNUPN variants cause limb-girdle muscular dystrophy (LGMDR29), a previously unrecognized disease entity 123. Pathogenic variants impair snurportin-1 function, leading to cytoplasmic accumulation of snRNP components, defective spliceosomal maturation, and widespread splicing dysregulation—particularly in genes governing muscle development and cytoskeletal organization 12. Clinical manifestations include proximal weakness starting in childhood, restrictive respiratory dysfunction, myofibrillar-like features with myotilin deposits, and Z-disc disorganization 13. Beyond muscular dystrophy, SNUPN shows pleiotropic associations across diseases. Proteome-wide Mendelian randomization studies identified SNUPN as causally associated with reduced bioavailable testosterone via elevated SHBG 4, decreased osteosarcopenia risk 5, and reduced Type 2 diabetes risk 6. Genetic variants in SNUPN are associated with breast cancer susceptibility 7.

Sources cited
1
Biallelic SNUPN variants cause limb-girdle muscular dystrophy with myofibrillar-like features; snurportin-1 mediates nuclear transport of snRNPs essential for spliceosome function
PMID: 38366623
2
SNUPN deficiency causes muscular dystrophy through defective snRNP oligomerization, impaired spliceosomal maturation, and dysregulation of splicing in sarcolemmal and cytoskeletal genes
PMID: 38413582
3
SNUPN variants impair snurportin-1 function through reduced binding affinity to importin-β and impaired folding, leading to disturbed nuclear import of snRNPs and downstream splicing defects
PMID: 41054283
4
SNUPN decreases bioavailable testosterone via elevated SHBG levels in proteome-wide Mendelian randomization analysis
PMID: 41161126
5
SNUPN identified as protective factor against osteosarcopenia in multi-omics Mendelian randomization study
PMID: 41071635
6
SNUPN displays negative causal relationship with Type 2 diabetes risk in proteome-wide Mendelian randomization with shared causal variants
PMID: 40026415
7
SNUPN protein levels show colocalized SNPs with breast cancer susceptibility in proteome-wide association study
PMID: 37409955
Disease Associationsⓘ21
muscular dystrophy, limb-girdle, autosomal recessive 29Open Targets
0.43Moderate
Abnormality of the skeletal systemOpen Targets
0.42Moderate
SNUPN-related muscular dystrophy with or without multi-system involvementOpen Targets
0.37Weak
type 2 diabetes mellitusOpen Targets
0.16Weak
JaundiceOpen Targets
0.13Weak
diabetes mellitusOpen Targets
0.05Suggestive
luminal A breast carcinomaOpen Targets
0.03Suggestive
breast carcinomaOpen Targets
0.02Suggestive
muscular dystrophyOpen Targets
0.02Suggestive
neoplasmOpen Targets
0.02Suggestive
breast cancerOpen Targets
0.01Suggestive
chronic kidney diseaseOpen Targets
0.01Suggestive
chronic obstructive pulmonary diseaseOpen Targets
0.01Suggestive
Herpes ZosterOpen Targets
0.01Suggestive
microphthalmia with limb anomaliesOpen Targets
0.01Suggestive
autismOpen Targets
0.01Suggestive
schizophreniaOpen Targets
0.01Suggestive
epilepsyOpen Targets
0.01Suggestive
cerebellar ataxiaOpen Targets
0.01Suggestive
limb-girdle muscular dystrophyOpen Targets
0.01Suggestive
Muscular dystrophy, limb-girdle, autosomal recessive 29UniProt
Pathogenic Variants2
NM_005701.4(SNUPN):c.902_903del (p.Tyr301fs)Pathogenic
not provided|Muscular dystrophy, limb-girdle, autosomal recessive 29
★★☆☆2025→ Residue 301
NM_005701.4(SNUPN):c.848C>G (p.Ser283Ter)Likely pathogenic
not provided
★☆☆☆2025→ Residue 283
View on ClinVar ↗
Related Genes
SNRPA1Protein interaction100%SNRPD1Protein interaction100%SNRPFProtein interaction100%SNRPBProtein interaction100%SNRPEProtein interaction100%KPNB1Protein interaction100%
Tissue Expression6 tissues
Ovary
100%
Heart
84%
Brain
82%
Liver
81%
Lung
69%
Bone Marrow
44%
Gene Interaction Network
Click a node to explore
SNUPNSNRPA1SNRPD1SNRPFSNRPBSNRPEKPNB1
PROTEIN STRUCTURE
Preparing viewer…
PDB2P8Q · 2.35 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.80LoF Tolerant
pLIⓘ
0.02Tolerant
Observed/Expected LoF0.50 [0.33–0.80]
RankingsWhere SNUPN stands among ~20K protein-coding genes
  • #10,242of 20,598
    Most Researched40
  • #4,468of 5,498
    Most Pathogenic Variants2
  • #6,634of 17,882
    Most Constrained (LOEUF)0.80
Genes detectedSNUPN
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Uncovering novel protein pathways regulating bioavailable testosterone through sex hormone-binding globulin.
PMID: 41161126
Comput Biol Chem · 2026
1.00
2
Biallelic variants in SNUPN cause a limb girdle muscular dystrophy with myofibrillar-like features.
PMID: 38366623
Brain · 2024
0.90
3
SNUPN deficiency causes a recessive muscular dystrophy due to RNA mis-splicing and ECM dysregulation.
PMID: 38413582
Nat Commun · 2024
0.80
4
Multi-omics Mendelian randomization and single-cell analysis identify novel therapeutic targets for osteosarcopenia.
PMID: 41071635
J Gerontol A Biol Sci Med Sci · 2025
0.70
5
SNUPN-Related Muscular Dystrophy: Novel Phenotypic, Pathological and Functional Protein Insights.
PMID: 41054283
Ann Clin Transl Neurol · 2026
0.60