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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SPIN1
spindlin 1
Chromosome 9 · 9q22.1
NCBI Gene: 10927Ensembl: ENSG00000106723.18HGNC: HGNC:11243UniProt: Q9Y657
118PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly Constrained
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
histone reader activityhistone H3K4me3 reader activitynucleoplasmnucleusovarian dysfunctionneurodegenerative diseasepoisoningnon-small cell lung carcinoma
✦AI Summary

SPIN1 (Spindlin 1) is a chr9 reader that recognizes histone H3 methylation marks and coordinates multiple cellular processes. Mechanistically, SPIN1 specifically binds histone H3 trimethylated at lysine 4 and lysine 9 (H3K4me3K9me3) 1, as well as H3K4me3 with asymmetrically dimethylated arginine 8 (H3R8me2a) 2. In male germ cells, SPIN1 serves as a critical authentication factor in piRNA-directed DNA methylation: it recognizes young LINE1 transposons marked with H3K4me3K9me3 and recruits PIWIL4 and SPOCD1 to promote transposon silencing 1. SPIN1 also activates Wnt signaling and promotes rRNA gene expression 2. In cancer, SPIN1 overexpression promotes tumorigenesis and therapy resistance through multiple mechanisms. SPIN1 acts as a proto-oncogene in seminoma by reducing apoptosis and upregulating CYCD1 3, while in non-small cell lung cancer, it confers radioresistance via the FOXO3a/FOXM1 axis 4. SPIN1 facilitates homologous recombination-mediated DNA repair by promoting H3K9me3-dependent Tip60 recruitment 5, contributing to chemoresistance 5. SPIN1 is elevated in gastric cancer and correlates with poor prognosis and epithelial-mesenchymal transition 6. Clinically, SPIN1 represents a promising therapeutic target in multiple cancer types 2.

Sources cited
1
SPIN1 binds H3K4me3K9me3, interacts with SPOCD1, and is essential for piRNA-directed DNA methylation of young LINE1 elements
PMID: 39294378
2
SPIN1 recognizes H3K4me3 and H3R8me2a methylation marks and controls Wnt and other oncogenic signaling pathways
PMID: 34492335
3
SPIN1 is pro-oncogenic in seminoma, reducing apoptosis and upregulating CYCD1
PMID: 30197756
4
SPIN1 confers radioresistance in NSCLC through the FOXO3a/FOXM1 axis and is associated with poor prognosis
PMID: 39548064
5
SPIN1 facilitates homologous recombination DNA repair by promoting H3K9me3-dependent Tip60 interaction and increases chemoresistance
PMID: 39090319
6
SPIN1 is elevated in gastric cancer and correlates with tumor progression, EMT, and poor survival outcomes
PMID: 40567896
Disease Associationsⓘ20
ovarian dysfunctionOpen Targets
0.25Weak
neurodegenerative diseaseOpen Targets
0.25Weak
poisoningOpen Targets
0.16Weak
non-small cell lung carcinomaOpen Targets
0.11Weak
cancerOpen Targets
0.10Suggestive
neoplasmOpen Targets
0.09Suggestive
gastric cancerOpen Targets
0.09Suggestive
breast cancerOpen Targets
0.08Suggestive
liposarcomaOpen Targets
0.08Suggestive
colorectal carcinomaOpen Targets
0.08Suggestive
Early-onset X-linked optic atrophyOpen Targets
0.05Suggestive
schizophreniaOpen Targets
0.05Suggestive
optic atrophy 2Open Targets
0.04Suggestive
triple-negative breast cancerOpen Targets
0.04Suggestive
Leber hereditary optic neuropathyOpen Targets
0.04Suggestive
retinitis pigmentosaOpen Targets
0.04Suggestive
attention deficit hyperactivity disorderOpen Targets
0.04Suggestive
hereditary attention deficit-hyperactivity disorderOpen Targets
0.04Suggestive
atypical pantothenate kinase-associated neurodegenerationOpen Targets
0.04Suggestive
leukoencephalopathy with mild cerebellar ataxia and white matter edemaOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
H3C13Protein interaction95%H3C14Protein interaction94%H3-3AProtein interaction94%H3C12Protein interaction92%H3-4Protein interaction91%H3C1Protein interaction89%
Tissue Expression6 tissues
Brain
100%
Ovary
61%
Bone Marrow
60%
Heart
55%
Lung
19%
Liver
18%
Gene Interaction Network
Click a node to explore
SPIN1H3C13H3C14H3-3AH3C12H3-4H3C1
PROTEIN STRUCTURE
Preparing viewer…
PDB7OCB · 1.42 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.25Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.08 [0.03–0.25]
RankingsWhere SPIN1 stands among ~20K protein-coding genes
  • #4,016of 20,598
    Most Researched118 · top quartile
  • #785of 17,882
    Most Constrained (LOEUF)0.25 · top 5%
Genes detectedSPIN1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
X centromeric drive may explain the prevalence of polycystic ovary syndrome and other conditions: Genomic structure of the human X chromosome pericentromeric region is consistent with meiotic drive associated with PCOS and other conditions.
PMID: 39072829
Bioessays · 2024
1.00
2
Two-factor authentication underpins the precision of the piRNA pathway.
PMID: 39294378
Nature · 2024
0.90
3
SPIN1 is a proto-oncogene and SPIN3 is a tumor suppressor in human seminoma.
PMID: 30197756
Oncotarget · 2018
0.80
4
SPIN1 facilitates chemoresistance and HR repair by promoting Tip60 binding to H3K9me3.
PMID: 39090319
EMBO Rep · 2024
0.70
5
SPIN1 accelerates tumorigenesis and confers radioresistance in non-small cell lung cancer by orchestrating the FOXO3a/FOXM1 axis.
PMID: 39548064
Cell Death Dis · 2024
0.60