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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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SRCAP
Snf2 related CREBBP activator protein
Chromosome 16 Β· 16p11.2
NCBI Gene: 10847Ensembl: ENSG00000080603.18HGNC: HGNC:16974UniProt: Q6ZRS2
101PubMed Papers
22Diseases
0Drugs
111Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedTranscription Factor
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
ATP-dependent chromatin remodeler activitytranscription coactivator activitypositive regulation of transcription by RNA polymerase IIcAMP/PKA signal transductionFloating-Harbor syndromeneurodevelopmental disorder with hypotonia and variable intellectual and behavioral abnormalitiesgenetic disorderNeurodevelopmental disorder
✦AI Summary

SRCAP (Snf2-related CREBBP activator protein) is an ATP-dependent chr16 remodeler that functions as the catalytic component of the SRCAP complex, mediating histone variant exchange and transcriptional regulation 12. The protein catalyzes ATP-dependent exchange of histone H2A.Z/H2B dimers for nucleosomal H2A/H2B, thereby modulating chr16 accessibility and gene expression 34. SRCAP acts as a coactivator for CREB-, steroid receptor-, and Notch-mediated transcription 567, and coordinates H2A.Z deposition at target gene promoters to regulate oncogenic transcription programs 4. Clinically, SRCAP mutations cause distinct neurodevelopmental phenotypes. Truncating variants in exons 33-34 cause Floating-Harbor syndrome, characterized by growth deficiency and skeletal abnormalities 8. Conversely, truncating variants proximal or distal to the FLHS locus cause non-FLHS SRCAP-related neurodevelopmental disorder with developmental delay, intellectual disability, behavioral problems, hypotonia, and musculoskeletal issues, exhibiting a distinct DNA methylation signature 9. Additionally, SRCAP mutations promote clonal hematopoiesis through dysregulated DNA repair and H2A.Z deposition, conferring selective advantage in hematopoietic stem cells 10. SRCAP alterations also occur in colorectal cancer and uterine leiomyomas, suggesting broader roles in tumorigenesis 113.

Sources cited
1
The protein catalyzes ATP-dependent exchange of histone H2A.Z/H2B dimers for nucleosomal H2A/H2B, thereby modulating chr16 accessibility and gene expression , .
PMID: 38280479
2
Truncating variants in exons 33-34 cause Floating-Harbor syndrome, characterized by growth deficiency and skeletal abnormalities .
PMID: 27208210
3
Conversely, truncating variants proximal or distal to the FLHS locus cause non-FLHS SRCAP-related neurodevelopmental disorder with developmental delay, intellectual disability, behavioral problems, hypotonia, and musculoskeletal issues, exhibiting a distinct DNA methylation signature .
PMID: 33909990
4
Additionally, SRCAP mutations promote clonal hematopoiesis through dysregulated DNA repair and H2A.Z deposition, conferring selective advantage in hematopoietic stem cells .
PMID: 37863054
⚠Limited data available β€” This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜22
Floating-Harbor syndromeOpen Targets
0.80Strong
neurodevelopmental disorder with hypotonia and variable intellectual and behavioral abnormalitiesOpen Targets
0.71Strong
genetic disorderOpen Targets
0.54Moderate
Neurodevelopmental disorderOpen Targets
0.51Moderate
neurodegenerative diseaseOpen Targets
0.37Weak
complex neurodevelopmental disorderOpen Targets
0.37Weak
Neurodevelopmental delayOpen Targets
0.35Weak
developmental disabilityOpen Targets
0.34Weak
epilepsyOpen Targets
0.27Weak
Moderate intellectual disabilityOpen Targets
0.26Weak
Rare genetic intellectual disabilityOpen Targets
0.26Weak
Intellectual disabilityOpen Targets
0.16Weak
autism spectrum disorderOpen Targets
0.16Weak
microcephalyOpen Targets
0.14Weak
cleft lip/palateOpen Targets
0.12Weak
non-syndromic intellectual disabilityOpen Targets
0.12Weak
46,XY disorder of sex developmentOpen Targets
0.11Weak
hypotrichosis simplexOpen Targets
0.06Suggestive
Alopecia universalisOpen Targets
0.06Suggestive
Alopecia-intellectual disability syndromeOpen Targets
0.06Suggestive
Developmental delay, hypotonia, musculoskeletal defects, and behavioral abnormalitiesUniProt
Floating-Harbor syndromeUniProt
Pathogenic Variants111
NM_006662.3(SRCAP):c.5633dup (p.Pro1879fs)Pathogenic
Neurodevelopmental disorder|not provided|Developmental delay, hypotonia, musculoskeletal defects, and behavioral abnormalities|Floating-Harbor syndrome;Developmental delay, hypotonia, musculoskeletal defects, and behavioral abnormalities|SRCAP-related disorder|Floating-Harbor syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 1879
NM_006662.3(SRCAP):c.7255C>T (p.Gln2419Ter)Pathogenic
not provided|Floating-Harbor syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 2419
NM_006662.3(SRCAP):c.7382del (p.Pro2461fs)Pathogenic
not provided|Floating-Harbor syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 2461
NM_006662.3(SRCAP):c.7330C>T (p.Arg2444Ter)Pathogenic
Floating-Harbor syndrome|not provided|Inborn genetic diseases|See cases|Neurodevelopmental delay|SRCAP-related disorder|Developmental delay, hypotonia, musculoskeletal defects, and behavioral abnormalities|Monogenic short statue|Developmental delay
β˜…β˜…β˜†β˜†2025β†’ Residue 2444
NM_006662.3(SRCAP):c.7727C>G (p.Ser2576Ter)Pathogenic
not provided|Floating-Harbor syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 2576
NM_006662.3(SRCAP):c.7303C>T (p.Arg2435Ter)Pathogenic
Floating-Harbor syndrome|not provided|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 2435
NM_006662.3(SRCAP):c.8242C>T (p.Arg2748Ter)Pathogenic
not provided|Floating-Harbor syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 2748
NM_006662.3(SRCAP):c.7376del (p.Pro2459fs)Pathogenic
Inborn genetic diseases|not provided|Floating-Harbor syndrome
β˜…β˜…β˜†β˜†2024β†’ Residue 2459
NM_006662.3(SRCAP):c.7219C>T (p.Gln2407Ter)Pathogenic
Floating-Harbor syndrome|not provided|Inborn genetic diseases
β˜…β˜…β˜†β˜†2024β†’ Residue 2407
NM_006662.3(SRCAP):c.6985C>T (p.Arg2329Ter)Pathogenic
not provided|Floating-Harbor syndrome
β˜…β˜…β˜†β˜†2024β†’ Residue 2329
NM_006662.3(SRCAP):c.8152C>T (p.Arg2718Ter)Pathogenic
not provided|Developmental delay, hypotonia, musculoskeletal defects, and behavioral abnormalities;Floating-Harbor syndrome
β˜…β˜…β˜†β˜†2023β†’ Residue 2718
NM_006662.3(SRCAP):c.7993C>T (p.Gln2665Ter)Pathogenic
Floating-Harbor syndrome
β˜…β˜…β˜†β˜†2023β†’ Residue 2665
NM_006662.3(SRCAP):c.7387del (p.Ser2463fs)Pathogenic
not provided
β˜…β˜…β˜†β˜†2022β†’ Residue 2463
NM_006662.3(SRCAP):c.7727C>A (p.Ser2576Ter)Pathogenic
Inborn genetic diseases|not provided
β˜…β˜…β˜†β˜†2018β†’ Residue 2576
NM_006662.3(SRCAP):c.1135-2A>CLikely pathogenic
Developmental delay, hypotonia, musculoskeletal defects, and behavioral abnormalities
β˜…β˜†β˜†β˜†2026
NM_006662.3(SRCAP):c.7183_7184del (p.Val2395fs)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 2395
NM_006662.3(SRCAP):c.7225dup (p.Ala2409fs)Likely pathogenic
Floating-Harbor syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 2409
NM_006662.3(SRCAP):c.7537_7538delinsGTGTA (p.Pro2513delinsValTer)Pathogenic
Floating-Harbor syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 2513
NM_006662.3(SRCAP):c.7549del (p.Gln2517fs)Pathogenic
Floating-Harbor syndrome|Inborn genetic diseases
β˜…β˜†β˜†β˜†2025β†’ Residue 2517
NM_006662.3(SRCAP):c.7699del (p.Ala2567fs)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 2567
View on ClinVar β†—
Related Genes
H2AZ1Protein interaction100%RUVBL1Protein interaction100%CFDP1Protein interaction100%INO80Protein interaction100%H2AC20Protein interaction100%EP300Protein interaction100%
Tissue Expression6 tissues
Lung
100%
Ovary
94%
Liver
79%
Brain
72%
Bone Marrow
8%
Heart
5%
Gene Interaction Network
Click a node to explore
SRCAPH2AZ1RUVBL1CFDP1INO80H2AC20EP300
PROTEIN STRUCTURE
Preparing viewer…
PDB8X15 Β· 3.20 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.22Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.17 [0.14–0.22]
RankingsWhere SRCAP stands among ~20K protein-coding genes
  • #4,750of 20,598
    Most Researched101 Β· top quartile
  • #710of 5,498
    Most Pathogenic Variants111 Β· top quartile
  • #585of 17,882
    Most Constrained (LOEUF)0.22 Β· top 5%
Genes detectedSRCAP
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Truncating SRCAP variants outside the Floating-Harbor syndrome locus cause a distinct neurodevelopmental disorder with a specific DNA methylation signature.
PMID: 33909990
Am J Hum Genet Β· 2021
1.00
2
When chromatin organisation floats astray: the Srcap gene and Floating-Harbor syndrome.
PMID: 27208210
J Med Genet Β· 2016
0.90
3
PMID: 23193612
0.80
4
Colorectal cancer cell lines are representative models of the main molecular subtypes of primary cancer.
PMID: 24755471
Cancer Res Β· 2014
0.70
5
SRCAP mutations drive clonal hematopoiesis through epigenetic and DNA repair dysregulation.
PMID: 37863054
Cell Stem Cell Β· 2023
0.60