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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SSX3
SSX family member 3
Chromosome X · Xp11.23
NCBI Gene: 10214Ensembl: ENSG00000165584.16HGNC: HGNC:11337UniProt: Q99909
18PubMed Papers
16Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingnucleusregulation of DNA-templated transcriptioncancerbladder transitional cell carcinomasynovial sarcomabreast cancer
✦AI Summary

SSX3 is an X-linked member of the SSX gene family, a group of cancer-testis antigens normally expressed in testis and thyroid 1. The protein contains a Krüppel-associated box (KRAB) domain and localizes to the nucleus, where it likely functions as a transcriptional modulator 21. SSX3 shares 90-95% sequence homology with other SSX family members and can interact with nuclear proteins such as SSX2IP, suggesting involvement in protein-protein interaction networks 1. Unlike SSX1 and SSX2, SSX3 does not act as a fusion partner with SYT in synovial sarcoma 2. Clinically, SSX3 has emerged as a candidate gene in nonobstructive azoospermia, suggesting involvement in spermatogenesis 3. SSX3 expression has been detected in certain malignancies, including sarcomas and potentially colorectal cancer, where its expression can be induced by epigenetic modulators 45. A novel EWSR1-SSX3 fusion has been identified in undifferentiated bone sarcomas, indicating potential oncogenic roles 5. Unlike other SSX family members, SSX3 expression cannot be induced by DNA methyltransferase inhibitors or histone deacetylase inhibitors in certain cell contexts, suggesting alternative regulatory mechanisms 6.

Sources cited
1
SSX3 identified as potential NOA-associated gene candidate in whole-genome sequencing study of nonobstructive azoospermia patients
PMID: 36017582
2
SSX3 is a novel KRAB-containing gene on Xp11.2-p11.1, 90% homologous to SSX1 and 95% homologous to SSX2, not involved in SYT fusion in synovial sarcomas
PMID: 8697803
3
SSX3 is a nuclear protein, interacts with SSX2IP protein, and belongs to cancer-testis antigen family with potential transcriptional repressor function
PMID: 12007189
4
SSX3 expression can be induced by epigenetic modulators in colorectal cancer cells in vitro
PMID: 37241221
5
Novel EWSR1-SSX3 gene fusion identified in undifferentiated bone sarcoma case
PMID: 38050902
6
SSX3 expression cannot be induced by 5-aza-2-deoxycytidine or Trichostatin A in tumor cell lines, unlike SSX1, SSX2, SSX4, and SSX6
PMID: 12216073
Disease Associationsⓘ16
cancerOpen Targets
0.01Suggestive
bladder transitional cell carcinomaOpen Targets
0.01Suggestive
synovial sarcomaOpen Targets
0.01Suggestive
breast cancerOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
chronic lymphocytic leukemiaOpen Targets
0.00Suggestive
leukemiaOpen Targets
0.00Suggestive
Nijmegen breakage syndromeOpen Targets
0.00Suggestive
small cell osteogenic sarcomaOpen Targets
0.00Suggestive
non-small cell lung carcinomaOpen Targets
0.00Suggestive
chronic obstructive pulmonary diseaseOpen Targets
0.00Suggestive
colon adenocarcinomaOpen Targets
0.00Suggestive
pancreatic ductal adenocarcinomaOpen Targets
0.00Suggestive
periodontitisOpen Targets
0.00Suggestive
acute myeloid leukemiaOpen Targets
0.00Suggestive
thyroid cancer, nonmedullary, 1Open Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
SSX2Protein interaction94%SSX2IPProtein interaction83%SSX1Protein interaction76%SS18Protein interaction72%SSX7Protein interaction70%SSX5Co-mentioned in literature20%
Tissue Expression6 tissues
Liver
0%
Brain
0%
Heart
0%
Ovary
0%
Lung
0%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
SSX3SSX2SSX2IPSSX1SS18SSX7SSX5
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q99909
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.80LoF Tolerant
pLIⓘ
0.34Tolerant
Observed/Expected LoF0.41 [0.22–0.80]
RankingsWhere SSX3 stands among ~20K protein-coding genes
  • #14,819of 20,598
    Most Researched18
  • #6,663of 17,882
    Most Constrained (LOEUF)0.80
Genes detectedSSX3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Whole-genome sequencing identifies new candidate genes for nonobstructive azoospermia.
PMID: 36017582
Andrology · 2022
1.00
2
A novel Krüppel-associated box containing the SSX gene (SSX3) on the human X chromosome is not implicated in t(X;18)-positive synovial sarcomas.
PMID: 8697803
Cytogenet Cell Genet · 1996
0.90
3
The cancer-related protein SSX2 interacts with the human homologue of a Ras-like GTPase interactor, RAB3IP, and a novel nuclear protein, SSX2IP.
PMID: 12007189
Genes Chromosomes Cancer · 2002
0.80
4
SSX2-4 expression in early-stage non-small cell lung cancer.
PMID: 24645645
Tissue Antigens · 2014
0.70
5
Expanding the molecular landscape of undifferentiated sarcomas of bone with a novel EWSR1-SSX3 gene fusion.
PMID: 38050902
Genes Chromosomes Cancer · 2024
0.60