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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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TAF3
TATA-box binding protein associated factor 3
Chromosome 10 · 10p14
NCBI Gene: 83860Ensembl: ENSG00000165632.9HGNC: HGNC:17303UniProt: A0A8I5KR98
75PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedHub GeneTranscription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
positive regulation of transcription initiation by RNA polymerase IInegative regulation of signal transduction by p53 class mediatortranscription factor TFIID complexnuclear membraneHIV infectionneurodegenerative diseaseHypercholesterolemiaAbruptio Placentae
✦AI Summary

TAF3 is a core promoter-binding subunit of the TFIID basal transcription factor complex essential for RNA polymerase II transcription initiation 1. As part of the TFIID-A module alongside TAF5 and TBP, TAF3 recognizes H3K4me3-marked promoters through its plant homeodomain (PHD) finger, facilitating preinitiation complex assembly 2. TAF3's H3K4me3-binding activity is further enhanced by serotonylation of histone H3Q5, a modification that stabilizes H3K4me3 and potentiates its readout 34. Beyond canonical transcription initiation, TAF3 exhibits specialized developmental functions. During myogenic differentiation, TAF3 forms a complex with TBPL2 that selectively replaces TFIID at specific promoters 5. In zebrafish development, selective TAF3-TRF3 interaction is required for hematopoiesis and early embryogenesis, distinct from TBP-dependent functions 6. In embryonic stem cells, TAF3 regulates lineage commitment through long-range chr10 looping with CTCF/cohesin complexes 7. Clinically, TAF3 represents a negative regulator of p53 transcription function 8, with elevated expression inhibiting p53-dependent gene activation. TAF3 is implicated in hepatocellular carcinoma pathogenesis, where elevated expression correlates with poor prognosis and cell proliferation 9. These findings establish TAF3 as a multifunctional transcriptional regulator integrating epigenetic signals with developmental and stress-response programs.

Sources cited
1
TAF3 is a core promoter-binding subunit of the TFIID basal transcription factor complex essential for RNA polymerase II transcription initiation .
PMID: 33795473
2
As part of the TFIID-A module alongside TAF5 and TBP, TAF3 recognizes H3K4me3-marked promoters through its plant homeodomain (PHD) finger, facilitating preinitiation complex assembly .
PMID: 23452851
3
During myogenic differentiation, TAF3 forms a complex with TBPL2 that selectively replaces TFIID at specific promoters .
PMID: 11438666
4
In zebrafish development, selective TAF3-TRF3 interaction is required for hematopoiesis and early embryogenesis, distinct from TBP-dependent functions .
PMID: 19777587
5
In embryonic stem cells, TAF3 regulates lineage commitment through long-range chr10 looping with CTCF/cohesin complexes .
PMID: 21884934
6
Clinically, TAF3 represents a negative regulator of p53 transcription function , with elevated expression inhibiting p53-dependent gene activation.
PMID: 18549481
7
TAF3 is implicated in hepatocellular carcinoma pathogenesis, where elevated expression correlates with poor prognosis and cell proliferation .
PMID: 40114746
Disease Associationsⓘ20
HIV infectionOpen Targets
0.58Moderate
neurodegenerative diseaseOpen Targets
0.37Weak
HypercholesterolemiaOpen Targets
0.28Weak
Abruptio PlacentaeOpen Targets
0.25Weak
facial painOpen Targets
0.18Weak
metabolic diseaseOpen Targets
0.09Suggestive
scleritisOpen Targets
0.04Suggestive
diaphragm diseaseOpen Targets
0.03Suggestive
external ear diseaseOpen Targets
0.03Suggestive
hepatocellular carcinomaOpen Targets
0.02Suggestive
Abnormal blistering of the skinOpen Targets
0.02Suggestive
Chronic Obstructive AsthmaOpen Targets
0.02Suggestive
bone remodeling diseaseOpen Targets
0.02Suggestive
Alzheimer diseaseOpen Targets
0.01Suggestive
acute lymphoblastic leukemiaOpen Targets
0.01Suggestive
lymphomaOpen Targets
0.00Suggestive
soft tissue sarcomaOpen Targets
0.00Suggestive
type 2 diabetes mellitusOpen Targets
0.00Suggestive
IGA glomerulonephritisOpen Targets
0.00Suggestive
atherosclerosisOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
MYOD1Protein interaction100%TAF4BProtein interaction100%TAF9Protein interaction100%TAF10Protein interaction100%TAF15Protein interaction100%TAF6LProtein interaction100%
Tissue Expression6 tissues
Brain
100%
Heart
80%
Bone Marrow
73%
Ovary
57%
Lung
46%
Liver
34%
Gene Interaction Network
Click a node to explore
TAF3MYOD1TAF4BTAF9TAF10TAF15TAF6L
PROTEIN STRUCTURE
Preparing viewer…
PDB5WXH · 1.30 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.12Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.05 [0.03–0.12]
RankingsWhere TAF3 stands among ~20K protein-coding genes
  • #6,368of 20,598
    Most Researched75
  • #119of 17,882
    Most Constrained (LOEUF)0.12 · top 1%
Genes detectedTAF3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Molecular determinants for recognition of serotonylated chromatin.
PMID: 40637225
Nucleic Acids Res · 2025
1.00
2
Histone H3Q5 serotonylation stabilizes H3K4 methylation and potentiates its readout.
PMID: 33526675
Proc Natl Acad Sci U S A · 2021
0.90
3
Selective interaction between Trf3 and Taf3 required for early development and hematopoiesis.
PMID: 19777587
Dev Dyn · 2009
0.80
4
H3K4me3 interactions with TAF3 regulate preinitiation complex assembly and selective gene activation.
PMID: 23452851
Cell · 2013
0.70
5
Identification of a novel FOXO3‑associated prognostic model in hepatocellular carcinoma.
PMID: 40114746
Oncol Lett · 2025
0.60