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3 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
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TRMT13
tRNA methyltransferase 13
Chromosome 1 Β· 1p21.2
NCBI Gene: 54482Ensembl: ENSG00000122435.12HGNC: HGNC:25502UniProt: B4DGS0
16PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingtRNA methyltransferase activitytRNA methylationmethyltransferase activitypapillary thyroid carcinomaalcohol drinkingcancerbreast cancer
✦AI Summary

TRMT13 is a tRNA methyltransferase that catalyzes 2'-O-methylation of cytidine at position 4 in tRNA(Pro) and tRNA(Gly)(GCC), and adenosine methylation at position 4 in tRNA(His). Beyond its canonical tRNA modification role, TRMT13 has emerged as a potential tumor suppressor in multiple malignancies. In papillary thyroid cancer (PTC), TRMT13 expression is significantly downregulated, and restoration of TRMT13 inhibits cancer cell proliferation, migration, and invasion through a mechanism involving regulation of ANAPC4 1. In nude mouse xenograft models, TRMT13 overexpression suppresses tumor growth, and TRMT13 expression levels correlate with patient survival 1. TRMT13 has also been identified as a driver gene in primary central nervous system lymphoma (PCNSL), appearing among the top 15 frequently mutated genes in this aggressive B-cell malignancy 2. Additionally, TRMT13 expression patterns contribute to identifying distinct subtypes of mild cognitive impairment, suggesting potential relevance in neurodegenerative conditions 3. These findings indicate that TRMT13 functions beyond its primary role in tRNA modification, with significant implications for cancer biology and neurological disease pathogenesis.

Sources cited
1
TRMT13 is downregulated in papillary thyroid cancer and inhibits PTC growth by targeting ANAPC4; TRMT13 expression correlates with survival
PMID: 38425244
2
TRMT13 identified as a driver gene in primary central nervous system lymphoma among top 15 frequently mutated genes
PMID: 38926963
3
TRMT13 expression plays a key role in identifying mild cognitive impairment subtypes in clustering analyses
PMID: 38082666
⚠Limited data available β€” This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜20
papillary thyroid carcinomaOpen Targets
0.07Suggestive
alcohol drinkingOpen Targets
0.06Suggestive
cancerOpen Targets
0.05Suggestive
breast cancerOpen Targets
0.05Suggestive
neoplasmOpen Targets
0.03Suggestive
Invasive Breast CarcinomaOpen Targets
0.01Suggestive
colorectal cancerOpen Targets
0.01Suggestive
breast carcinomaOpen Targets
0.01Suggestive
liver cancerOpen Targets
0.01Suggestive
SepsisOpen Targets
0.01Suggestive
breast ductal adenocarcinomaOpen Targets
0.01Suggestive
invasive lobular carcinomaOpen Targets
0.01Suggestive
lobular breast carcinomaOpen Targets
0.01Suggestive
Pick diseaseOpen Targets
0.01Suggestive
juvenile dermatomyositisOpen Targets
0.01Suggestive
primitive neuroectodermal tumorOpen Targets
0.01Suggestive
cervical cancerOpen Targets
0.00Suggestive
hepatocellular carcinomaOpen Targets
0.00Suggestive
type 1 diabetes mellitusOpen Targets
0.00Suggestive
acute myeloid leukemiaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar β†—
Related Genes
TRDMT1Shared pathway67%THUMPD3Shared pathway50%TRMOShared pathway50%TRMT44Shared pathway50%TRMT10AShared pathway50%TRMT1LShared pathway50%
Tissue Expression6 tissues
Ovary
100%
Heart
77%
Liver
66%
Lung
45%
Bone Marrow
38%
Brain
24%
Gene Interaction Network
Click a node to explore
TRMT13TRDMT1THUMPD3TRMOTRMT44TRMT10ATRMT1L
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q9NUP7
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.05LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.79 [0.61–1.05]
RankingsWhere TRMT13 stands among ~20K protein-coding genes
  • #15,426of 20,598
    Most Researched16
  • #10,466of 17,882
    Most Constrained (LOEUF)1.05
Genes detectedTRMT13
Sources retrieved3 papers
Response timeβ€”
πŸ“„ Sources
3
1
[Whole Exome Sequencing Reveals Gene Mutation Characteristics of Primary Central Nervous System Lymphoma].
PMID: 38926963
Zhongguo Shi Yan Xue Ye Xue Za Zhi Β· 2024
1.00
2
Identification of Mild Cognitive Impairment Subtypes using an Interpretable Neural Network based Clustering of Gene Expression Data and Neuroimaging Markers.
PMID: 38082666
Annu Int Conf IEEE Eng Med Biol Soc Β· 2023
0.67
3
TRMT13 inhibits the growth of papillary thyroid cancer by targeting ANAPC4.
PMID: 38425244
Acta Biochim Biophys Sin (Shanghai) Β· 2024
0.33