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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
TTC21B
tetratricopeptide repeat domain 21B
Chromosome 2 Β· 2q24.3
NCBI Gene: 79809Ensembl: ENSG00000123607.16HGNC: HGNC:25660UniProt: A0A7P0TA66
38PubMed Papers
23Diseases
0Drugs
139Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
regulation of transcription by RNA polymerase IIprotein localization to ciliumintraciliary transport particle Aprotein bindingnephronophthisisJeune syndromeInfantile nephronophthisisRetinal dystrophy
✦AI Summary

TTC21B encodes IFT139, a component of the intraflagellar transport-A (IFT-A) complex essential for retrograde ciliary transport and cilium assembly 1. The protein facilitates retrograde trafficking of IFT-B complexes and G protein-coupled receptors into cilia 2, and localizes at the ciliary base in developing podocytes but redistributes along microtubules in differentiated cells 1. TTC21B mutations cause nephronophthisis 12 (NPHP12), characterized by progressive cystic kidney disease, tubular basement membrane thickening, and interstitial fibrosis 34. Homozygous missense mutations, particularly p.P209L, cause focal segmental glomerulosclerosis (FSGS) with tubulointerstitial lesions and associated systemic features including hypertension and myopia 51. Heterozygous TTC21B variants act as genetic modifiers, increasing severity in compound heterozygous carriers and appearing enriched in kidney disease patients 5. TTC21B mutations also associate with short-rib thoracic dysplasias and represent a novel candidate gene in Bardet-Biedl syndrome, where mutations increase kidney failure risk 67. The gene contributes to biliary ciliopathy phenotypes 8. Importantly, both homozygous and heterozygous mutations can cause disease, with neonatal presentations possible 4, making genetic testing valuable for unexplained kidney disease across age groups.

Sources cited
1
TTC21B is essential for retrograde trafficking of IFT-B and GPCRs
PMID: 27932497
2
TTC21B gene product (IFT139) localizes at ciliary base in developing podocytes; p.P209L homozygous mutation causes familial FSGS with tubulointerstitial lesions
PMID: 24876116
3
Single heterozygous TTC21B nonsense mutation causes adult-onset nephronophthisis 12 with chronic interstitial nephritis
PMID: 36263627
4
Compound-heterozygous TTC21B variants cause neonatal nephronophthisis 12; Cys518Arg is a hotspot variant associated with early ESRD
PMID: 38439578
5
Homozygous p.P209L and compound heterozygous TTC21B mutations cause FSGS with tubulointerstitial disease; heterozygous variants act as genetic modifiers
PMID: 26940125
6
TTC21B is a candidate Bardet-Biedl syndrome gene with increased kidney failure incidence
PMID: 35112343
7
TTC21B mutations cause skeletal ciliopathies including short rib-polydactyly syndromes
PMID: 22791528
8
TTC21B mutations associate with biliary ciliopathy and expand phenotypic spectrum of TTC21B deficiency
PMID: 36273201
Disease Associationsβ“˜23
nephronophthisisOpen Targets
0.82Strong
Jeune syndromeOpen Targets
0.76Strong
Infantile nephronophthisisOpen Targets
0.52Moderate
Retinal dystrophyOpen Targets
0.50Moderate
short-rib thoracic dysplasia 6 with or without polydactylyOpen Targets
0.44Moderate
alcohol drinkingOpen Targets
0.43Moderate
nephrotic syndromeOpen Targets
0.42Moderate
genetic disorderOpen Targets
0.42Moderate
Beemer-Langer syndromeOpen Targets
0.42Moderate
Senior-Loken syndromeOpen Targets
0.40Weak
hypertensionOpen Targets
0.38Weak
focal segmental glomerulosclerosisOpen Targets
0.37Weak
myopiaOpen Targets
0.37Weak
inherited retinal dystrophyOpen Targets
0.37Weak
nephronophthisis 2Open Targets
0.37Weak
neurodegenerative diseaseOpen Targets
0.36Weak
congenital nephrotic syndrome, Finnish typeOpen Targets
0.36Weak
sign or symptomOpen Targets
0.35Weak
connective tissue diseaseOpen Targets
0.33Weak
Joubert syndromeOpen Targets
0.18Weak
Joubert syndrome 11UniProt
Nephronophthisis 12UniProt
Short-rib thoracic dysplasia 4 with or without polydactylyUniProt
Pathogenic Variants139
NM_024753.5(TTC21B):c.553-2A>GLikely pathogenic
not provided|Nephronophthisis;Jeune thoracic dystrophy|Asphyxiating thoracic dystrophy 4;Nephronophthisis 12
β˜…β˜…β˜†β˜†2026
NM_024753.5(TTC21B):c.626C>T (p.Pro209Leu)Pathogenic
Nephronophthisis 12|not provided|Jeune thoracic dystrophy;Nephronophthisis|Asphyxiating thoracic dystrophy 4;Nephronophthisis 12|Finnish congenital nephrotic syndrome|Infantile nephronophthisis|Renal dysplasia and retinal aplasia|Retinal dystrophy|Nephrotic syndrome|See cases|TTC21B-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 209
NM_024753.5(TTC21B):c.1715C>A (p.Ser572Ter)Pathogenic
not provided|Jeune thoracic dystrophy;Nephronophthisis
β˜…β˜…β˜†β˜†2026β†’ Residue 572
NM_024753.5(TTC21B):c.2951-1G>ALikely pathogenic
Asphyxiating thoracic dystrophy 4;Nephronophthisis 12|Nephronophthisis;Jeune thoracic dystrophy
β˜…β˜…β˜†β˜†2025
NM_024753.5(TTC21B):c.2741del (p.Cys914fs)Pathogenic
not provided|Asphyxiating thoracic dystrophy 4;Nephronophthisis 12|Jeune thoracic dystrophy;Nephronophthisis
β˜…β˜…β˜†β˜†2025β†’ Residue 914
NM_024753.5(TTC21B):c.1231C>T (p.Arg411Ter)Pathogenic
Asphyxiating thoracic dystrophy 4|not provided|Jeune thoracic dystrophy;Nephronophthisis
β˜…β˜…β˜†β˜†2025β†’ Residue 411
NM_024753.5(TTC21B):c.3102-2A>GLikely pathogenic
Nephronophthisis 12;Asphyxiating thoracic dystrophy 4|Jeune thoracic dystrophy;Nephronophthisis
β˜…β˜…β˜†β˜†2025
NM_024753.5(TTC21B):c.2500C>T (p.Gln834Ter)Pathogenic
Short-rib thoracic dysplasia 6 with or without polydactyly|Jeune thoracic dystrophy;Nephronophthisis|not provided|TTC21B-related disorder|Asphyxiating thoracic dystrophy 4;Nephronophthisis 12
β˜…β˜…β˜†β˜†2025β†’ Residue 834
NM_024753.5(TTC21B):c.1087+1G>ALikely pathogenic
Jeune thoracic dystrophy;Nephronophthisis|Asphyxiating thoracic dystrophy 4;Nephronophthisis 12
β˜…β˜…β˜†β˜†2025
NM_024753.5(TTC21B):c.2572C>T (p.Arg858Ter)Pathogenic
Jeune thoracic dystrophy;Nephronophthisis|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 858
NM_024753.5(TTC21B):c.2758-2A>GPathogenic
Nephronophthisis 12|Infantile nephronophthisis|Asphyxiating thoracic dystrophy 4;Nephronophthisis 12|Jeune thoracic dystrophy;Nephronophthisis|Ovarian serous cystadenocarcinoma|Familial cancer of breast
β˜…β˜…β˜†β˜†2025
NM_024753.5(TTC21B):c.1546C>T (p.Gln516Ter)Pathogenic
Nephronophthisis;Jeune thoracic dystrophy|Nephronophthisis 12;Asphyxiating thoracic dystrophy 4
β˜…β˜…β˜†β˜†2025β†’ Residue 516
NM_024753.5(TTC21B):c.2913dup (p.Val972fs)Pathogenic
not provided|Nephronophthisis;Jeune thoracic dystrophy|Asphyxiating thoracic dystrophy 4;Nephronophthisis 12
β˜…β˜…β˜†β˜†2025β†’ Residue 972
NM_024753.5(TTC21B):c.1377T>A (p.Cys459Ter)Pathogenic
Jeune thoracic dystrophy;Nephronophthisis|Asphyxiating thoracic dystrophy 4;Nephronophthisis 12
β˜…β˜…β˜†β˜†2025β†’ Residue 459
NM_024753.5(TTC21B):c.264_267dupTAGAPathogenic
Nephronophthisis 12;Asphyxiating thoracic dystrophy 4|Jeune thoracic dystrophy;Nephronophthisis|Bardet-Biedl syndrome 2|Nephronophthisis 12
β˜…β˜…β˜†β˜†2024
NM_024753.5(TTC21B):c.1320del (p.Phe440fs)Pathogenic
Type IV short rib polydactyly syndrome|Retinal dystrophy|Jeune thoracic dystrophy;Nephronophthisis|Asphyxiating thoracic dystrophy 4;Nephronophthisis 12|Asphyxiating thoracic dystrophy 4
β˜…β˜…β˜†β˜†2024β†’ Residue 440
NM_024753.5(TTC21B):c.1126_1127insGT (p.Asp376fs)Pathogenic
Jeune thoracic dystrophy;Nephronophthisis|Nephronophthisis 12
β˜…β˜…β˜†β˜†2024β†’ Residue 376
NM_024753.5(TTC21B):c.1386+1G>TLikely pathogenic
Nephronophthisis 12;Asphyxiating thoracic dystrophy 4|Jeune thoracic dystrophy;Nephronophthisis|not provided
β˜…β˜…β˜†β˜†2024
NM_024753.5(TTC21B):c.431delPathogenic
Jeune thoracic dystrophy;Nephronophthisis|Asphyxiating thoracic dystrophy 4;Nephronophthisis 12
β˜…β˜…β˜†β˜†2024
NM_024753.5(TTC21B):c.3130C>T (p.Arg1044Ter)Pathogenic
Jeune thoracic dystrophy;Nephronophthisis|Asphyxiating thoracic dystrophy 4;Nephronophthisis 12
β˜…β˜…β˜†β˜†2024β†’ Residue 1044
View on ClinVar β†—
Related Genes
TULP3Protein interaction100%DYNC2H1Protein interaction100%IFT74Protein interaction100%IFT20Protein interaction99%GLI3Protein interaction84%KIF3AProtein interaction83%
Tissue Expression6 tissues
Heart
100%
Bone Marrow
98%
Ovary
89%
Brain
68%
Lung
60%
Liver
45%
Gene Interaction Network
Click a node to explore
TTC21BTULP3DYNC2H1IFT74IFT20GLI3KIF3A
PROTEIN STRUCTURE
Preparing viewer…
PDB8BBE Β· 3.50 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.83LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.71 [0.60–0.83]
RankingsWhere TTC21B stands among ~20K protein-coding genes
  • #10,566of 20,598
    Most Researched38
  • #555of 5,498
    Most Pathogenic Variants139 Β· top quartile
  • #7,100of 17,882
    Most Constrained (LOEUF)0.83
Genes detectedTTC21B
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
PMID: 27336129
1.00
2
PMID: 20301500
0.90
3
Prenatal whole-exome sequencing for fetal structural anomalies: a retrospective analysis of 145 Chinese cases.
PMID: 37880672
BMC Med Genomics Β· 2023
0.80
4
A single heterozygous nonsense mutation in the TTC21B gene causes adult-onset nephronophthisis 12: A case report and review of literature.
PMID: 36263627
Mol Genet Genomic Med Β· 2022
0.70
5
Contribution of the TTC21B gene to glomerular and cystic kidney diseases.
PMID: 26940125
Nephrol Dial Transplant Β· 2017
0.60