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25 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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WNT3A
Wnt family member 3A
Chromosome 1 · 1q42.13
NCBI Gene: 89780Ensembl: ENSG00000154342.7HGNC: HGNC:15983UniProt: P56704
240PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
cardiac muscle cell fate commitmentcanonical Wnt signaling pathwayregulation of synapse organizationglutamatergic synapseneurodegenerative diseasehypertensionglomerulonephritisIncreased blood pressure
✦AI Summary

WNT3A encodes a secreted signaling ligand that functions primarily in the canonical Wnt signaling pathway. The protein requires palmitoleoylation by the enzyme Porcupine for proper function and receptor binding 1. WNT3A binds to Frizzled family receptors, triggering downstream activation of transcription factors in the TCF/LEF family through β-catenin stabilization 2. The protein plays critical roles in embryonic development, particularly in mesoderm formation and neural tube morphogenesis. In disease contexts, WNT3A demonstrates significant clinical relevance across multiple conditions. Elevated WNT3A expression is observed in aganglionic colon segments from Hirschsprung disease patients, with specific gene variants (rs192966556 and rs145882986) conferring increased disease risk 3. WNT3A is implicated in cancer biology, with elevated serum levels detected in non-small cell lung cancer patients alongside multiple gene mutations 4. The protein also shows therapeutic potential, as WNT3A-loaded extracellular vesicles promote alveolar epithelial regeneration and restore pulmonary function in emphysema models 5. Additionally, dysregulated WNT3A expression is associated with chr1 venous insufficiency 6, and it has been proposed as a candidate gene for certain skeletal dysplasias 7.

Sources cited
1
WNT3A requires palmitoleoylation by Porcupine enzyme for proper function and receptor binding
PMID: 35831507
2
WNT3A binds Frizzled receptors and activates canonical Wnt signaling through β-catenin
PMID: 28587752
3
Elevated WNT3A expression in Hirschsprung disease and specific gene variants increase disease risk
PMID: 24817932
4
Elevated WNT3A serum levels and mutations found in non-small cell lung cancer patients
PMID: 38015536
5
WNT3A-loaded extracellular vesicles promote lung epithelial regeneration and restore pulmonary function
PMID: 37072558
6
Dysregulated WNT3A expression is associated with chronic venous insufficiency
PMID: 39680245
7
WNT3A proposed as candidate gene for skeletal dysplasias
PMID: 29620724
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.53Moderate
hypertensionOpen Targets
0.42Moderate
glomerulonephritisOpen Targets
0.35Weak
Increased blood pressureOpen Targets
0.28Weak
cardiovascular diseaseOpen Targets
0.28Weak
cervical carcinomaOpen Targets
0.27Weak
diaphragm diseaseOpen Targets
0.27Weak
essential hypertensionOpen Targets
0.27Weak
hepatocellular carcinomaOpen Targets
0.11Weak
Knee painOpen Targets
0.10Weak
melanomaOpen Targets
0.10Weak
preeclampsiaOpen Targets
0.09Suggestive
neoplasmOpen Targets
0.09Suggestive
lung adenocarcinomaOpen Targets
0.09Suggestive
response to xenobiotic stimulusOpen Targets
0.08Suggestive
glioblastoma multiformeOpen Targets
0.08Suggestive
autosomal recessive spondylocostal dysostosisOpen Targets
0.08Suggestive
colon carcinomaOpen Targets
0.08Suggestive
head and neck squamous cell carcinomaOpen Targets
0.08Suggestive
laryngeal squamous cell carcinomaOpen Targets
0.07Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
PTK7Protein interaction100%GSK3BProtein interaction98%CAV1Protein interaction97%APCDD1Protein interaction96%RSPO1Protein interaction96%LRP5Protein interaction95%
Tissue Expression6 tissues
Lung
100%
Brain
1%
Bone Marrow
0%
Ovary
0%
Heart
0%
Liver
0%
Gene Interaction Network
Click a node to explore
WNT3APTK7GSK3BCAV1APCDD1RSPO1LRP5
PROTEIN STRUCTURE
Preparing viewer…
PDB7DRT · 2.20 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.76LoF Tolerant
pLIⓘ
0.01Tolerant
Observed/Expected LoF0.51 [0.35–0.76]
RankingsWhere WNT3A stands among ~20K protein-coding genes
  • #1,641of 20,598
    Most Researched240 · top 10%
  • #6,079of 17,882
    Most Constrained (LOEUF)0.76
Genes detectedWNT3A
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
Mechanisms and inhibition of Porcupine-mediated Wnt acylation.
PMID: 35831507
Nature · 2022
1.00
2
Expanding the phenome and variome of skeletal dysplasia.
PMID: 29620724
Genet Med · 2018
0.90
3
WNT3-WNT14B and WNT3A-WNT14 gene clusters (Review).
PMID: 12011973
Int J Mol Med · 2002
0.80
4
Molecular insights into Wnt3a and Wnt5a gene expression in venous insufficiency.
PMID: 39680245
Mol Biol Rep · 2024
0.70
5
Hypermethylation of WNT3A gene and non-syndromic cleft lip and/or palate in association with in utero exposure to lead: A mediation analysis.
PMID: 33091767
Ecotoxicol Environ Saf · 2021
0.64