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8 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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ZNF25
zinc finger protein 25
Chromosome 10 · 10p11.21
NCBI Gene: 219749Ensembl: ENSG00000175395.17HGNC: HGNC:13043UniProt: P17030
19PubMed Papers
19Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleusosteoblast differentiationDNA-binding transcription repressor activity, RNA polymerase II-specificprotein bindingplacenta praeviaagingpreeclampsiaAbruptio Placentae
✦AI Summary

ZNF25 (zinc finger protein 25) is a KRAB-containing transcription factor located in the pericentromeric region of human chromosome 10 1 that functions as a DNA-binding transcriptional repressor of RNA polymerase II [GO annotations]. The protein exhibits nuclear localization and is expressed in osteoblastic and osteocytic cells in vivo 2. Mechanistically, ZNF25 acts as a transcriptional repressor during osteoblast differentiation. siRNA knockdown of ZNF25 significantly suppressed alkaline phosphatase activity in human mesenchymal stem cells 2, revealing its role in regulating genes involved in extracellular matrix organization and skeletal system development. ZNF25 appears to repress matrix metallopeptidase 1 and other genes associated with bone remodeling 2. Clinically, ZNF25 has emerged as a candidate gene in multiple disease contexts. Genome-wide association meta-analysis identified ZNF25 as a novel susceptibility locus for Hirschsprung disease (HSCR), a congenital disorder affecting enteric nervous system development, with functional studies demonstrating that ZNF25 knockdown impairs cell migration and zebrafish knockouts display abnormal ENS development 3. Additionally, ZNF25 has been identified as a putative target in gestational diabetes mellitus pathology through microRNA-mediated regulation 4 and as a key lncRNA target in Parkinson's disease 5, suggesting broader roles in metabolic and neurological processes.

Sources cited
1
ZNF25 is associated with osteoblast differentiation; contains KRAB transcriptional repressor domain; knockdown suppresses alkaline phosphatase activity; regulates matrix metallopeptidase 1 and genes involved in skeletal system development
PMID: 27814695
2
ZNF25/KOX19 is located in pericentromeric region of chromosome 10p11.2-q11.2
PMID: 1639412
3
ZNF25 identified as novel HSCR-susceptibility locus; knockdown impairs cell migration; zebrafish knockouts display abnormal ENS development
PMID: 40184909
4
ZNF25 is a prominent gene targeted by microRNAs dysregulated in gestational diabetes mellitus
PMID: 36434110
5
lnc-ZNF25-7:1 identified as key lncRNA in Parkinson's disease plasma expression profiles
PMID: 39623270
6
ZNF25 is a known gene in the distal region of pericentromeric chromosome 10 sequence
PMID: 12566394
7
ZNF25/KOX19 defined as part of zinc finger gene cluster A in pericentromeric region of human chromosome 10
PMID: 8464732
Disease Associationsⓘ19
placenta praeviaOpen Targets
0.28Weak
agingOpen Targets
0.09Suggestive
preeclampsiaOpen Targets
0.03Suggestive
Abruptio PlacentaeOpen Targets
0.02Suggestive
ovarian neoplasmOpen Targets
0.02Suggestive
response to antidepressantOpen Targets
0.02Suggestive
ataxia telangiectasiaOpen Targets
0.01Suggestive
gestational diabetesOpen Targets
0.01Suggestive
endometriosisOpen Targets
0.00Suggestive
genetic disorderOpen Targets
0.00Suggestive
meningococcal infectionOpen Targets
0.00Suggestive
Alzheimer diseaseOpen Targets
0.00Suggestive
acute myeloid leukemiaOpen Targets
0.00Suggestive
cancerOpen Targets
0.00Suggestive
osteoarthritisOpen Targets
0.00Suggestive
type 1 diabetes mellitusOpen Targets
0.00Suggestive
Hereditary breast cancerOpen Targets
0.00Suggestive
hereditary breast carcinomaOpen Targets
0.00Suggestive
lung cancerOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
TMT1AShared pathway50%RDH14Shared pathway50%IARS1Shared pathway33%LRRC17Shared pathway33%SP7Shared pathway33%RRAS2Shared pathway33%
Tissue Expression6 tissues
Brain
100%
Heart
74%
Ovary
53%
Lung
30%
Bone Marrow
22%
Liver
12%
Gene Interaction Network
Click a node to explore
ZNF25TMT1ARDH14IARS1LRRC17SP7RRAS2
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt P17030
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.86LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.61 [0.44–0.86]
RankingsWhere ZNF25 stands among ~20K protein-coding genes
  • #14,604of 20,598
    Most Researched19
  • #7,576of 17,882
    Most Constrained (LOEUF)0.86
Genes detectedZNF25
Sources retrieved8 papers
Response time—
📄 Sources
8▼
1
Extracellular Vesicle-Packaged Linc-ZNF25-1 from Pancreatic Cancer Cell Promotes Pancreatic Stellate Cell Uptake of Asparagine to Advance Chemoresistance.
PMID: 40041969
Adv Sci (Weinh) · 2025
1.00
2
Analysis of serum circulating MicroRNAs level in Malaysian patients with gestational diabetes mellitus.
PMID: 36434110
Sci Rep · 2022
0.88
3
Multi-ancestry genome-wide association meta-analysis identifies novel associations and informs genetic risk prediction for Hirschsprung disease.
PMID: 40184909
EBioMedicine · 2025
0.75
4
Transcription factor ZNF25 is associated with osteoblast differentiation of human skeletal stem cells.
PMID: 27814695
BMC Genomics · 2016
0.63
5
A cluster of expressed zinc finger protein genes in the pericentromeric region of human chromosome 10.
PMID: 1639412
Genomics · 1992
0.50