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GeneE
2 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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H2BC5
H2B clustered histone 5
Chromosome 6 · 6p22.2
NCBI Gene: 3017Ensembl: ENSG00000158373.10HGNC: HGNC:4746UniProt: P58876
95PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
extracellular exosomeprotein bindingnucleuschromatin organizationinfectious diseaseviral diseasebreast carcinomacancer
✦AI Summary

Based on limited published evidence, H2BC5 encodes a core histone protein functioning as a structural component of nucleosomes, regulating DNA accessibility and chr6 organization critical for transcription, DNA repair, replication, and chr6 stability [UniProt]. The protein also possesses antimicrobial properties, potentially contributing to epithelial barriers and innate immunity. H2BC5 expression is altered in disease states: downregulated in hepatitis C-infected cells 1 and identified as a hub gene in sudden infant death syndrome and infectious sudden death analyses 2, suggesting involvement in viral carcinogenesis and immune/inflammatory pathways.

Sources cited
1
H2BC5 expression is decreased in HCV-infected cells and is associated with viral carcinogenesis KEGG pathways
PMID: 39766770
2
H2BC5 identified as a hub gene in SIDS and infectious sudden death, with differentially expressed genes enriched in immune and inflammatory pathways
PMID: 38006261
⚠Limited data available — This gene has 2 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
infectious diseaseOpen Targets
0.50Moderate
viral diseaseOpen Targets
0.50Moderate
breast carcinomaOpen Targets
0.39Weak
cancerOpen Targets
0.38Weak
melanomaOpen Targets
0.37Weak
dengue diseaseOpen Targets
0.37Weak
sebaceous of Jadassohn nevusOpen Targets
0.07Suggestive
actinic keratosisOpen Targets
0.06Suggestive
squamous cell carcinomaOpen Targets
0.06Suggestive
chronic rhinosinusitis with nasal polypsOpen Targets
0.03Suggestive
glioblastoma multiformeOpen Targets
0.02Suggestive
neoplasmOpen Targets
0.01Suggestive
lung carcinomaOpen Targets
0.01Suggestive
nail-patella syndromeOpen Targets
0.01Suggestive
posterior cortical atrophyOpen Targets
0.01Suggestive
breast cancerOpen Targets
0.01Suggestive
prostate cancerOpen Targets
0.01Suggestive
lung adenocarcinomaOpen Targets
0.01Suggestive
gliomaOpen Targets
0.01Suggestive
colorectal carcinomaOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
H2BC26Shared pathway100%H2AC20Protein interaction100%H3-4Protein interaction100%H3-3BProtein interaction100%H3C13Protein interaction100%H3C12Protein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
3%
Liver
0%
Brain
0%
Heart
0%
Ovary
0%
Gene Interaction Network
Click a node to explore
H2BC5H2BC26H2AC20H3-4H3-3BH3C13H3C12
PROTEIN STRUCTURE
Preparing viewer…
PDB6ACO · 1.71 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.68LoF Tolerant
pLIⓘ
0.01Tolerant
Observed/Expected LoF0.90 [0.49–1.68]
RankingsWhere H2BC5 stands among ~20K protein-coding genes
  • #5,032of 20,598
    Most Researched95 · top quartile
  • #16,032of 17,882
    Most Constrained (LOEUF)1.68
Genes detectedH2BC5
Sources retrieved2 papers
Response time—
📄 Sources
2
1
CXCL10, SCGN, and H2BC5 as Potential Key Genes Regulated by HCV Infection.
PMID: 39766770
Genes (Basel) · 2024
1.00
2
Screening of Genes Co-Associated with Sudden Infant Death Syndrome and Infectious Sudden Death in Infancy and Bioinformatics Analysis of Their Regulatory Networks.
PMID: 38006261
Fa Yi Xue Za Zhi · 2023
0.50