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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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HMGN1
high mobility group nucleosome binding domain 1
Chromosome 21 · 21q22.2
NCBI Gene: 3150Ensembl: ENSG00000205581.12HGNC: HGNC:4984UniProt: P05114
110PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleusprotein bindingnucleoplasmchromatin bindingosteoarthritis, kneeosteoarthritis, hiphealth study participationtotal joint arthroplasty
✦AI Summary

HMGN1 is a nucleosome-binding epigenetic regulator that functions as a chr21 remodeler with roles in both transcriptional regulation and immune signaling. Intracellularly, HMGN1 binds to nucleosomal DNA and alters DNA-histone interactions, facilitating chr21 decompaction at transcriptional regulatory elements including promoters and enhancers 1. It modulates histone modifications, particularly antagonizing PRC2-mediated H3K27me3 deposition to prevent gene silencing 2, and inhibits phosphorylation of histones H3 and H2A. HMGN1 is critical for atrioventricular canal cardiomyocyte development; its dosage imbalance in trisomy 21 causes aberrant transcriptional reprogramming and congenital heart defects, which are rescued by reducing HMGN1 dosage 3. Extracellularly, HMGN1 functions as a Th1-polarizing alarmin, promoting dendritic cell recruitment via GiPCR interaction and TLR4 activation to generate innate and adaptive immune responses 4. In cancer contexts, HMGN1 overexpression contributes to leukemogenesis in trisomy 21-associated acute lymphoblastic leukemia and iAMP21-ALL 5, while supporting antitumor immunity 6. Notably, HMGN1 is not required for transcription-coupled DNA repair in human cells 7. These dual roles—chr21 regulation and immune signaling—position HMGN1 as a dosage-sensitive regulator relevant to developmental disorders, cancer, and immunotherapy.

Sources cited
1
HMGN1 dosage imbalance causes congenital heart defects in trisomy 21 through cardiomyocyte reprogramming
PMID: 41125893
2
HMGN1 is not required for human transcription-coupled DNA repair
PMID: 32152397
3
HMGN1 antagonizes PRC2 and prevents H3K27me3 deposition; role in Down syndrome brain pathology
PMID: 36463299
4
HMGN1 functions as a Th1-polarizing alarmin activating dendritic cells via TLR4
PMID: 29503123
5
HMGN1 establishes chromatin-accessible domains at enhancers and promoters
PMID: 26709929
6
HMGN1 is implicated in pathogenesis of iAMP21-ALL through chromosome 21 amplification
PMID: 37216686
7
HMGN1 contributes to antitumor immunity as an alarmin
PMID: 27101817
Disease Associationsⓘ20
osteoarthritis, kneeOpen Targets
0.27Weak
osteoarthritis, hipOpen Targets
0.27Weak
health study participationOpen Targets
0.17Weak
total joint arthroplastyOpen Targets
0.11Weak
neoplasmOpen Targets
0.11Weak
cancerOpen Targets
0.08Suggestive
lung adenocarcinomaOpen Targets
0.08Suggestive
leukemiaOpen Targets
0.08Suggestive
acute myeloid leukemiaOpen Targets
0.08Suggestive
atrial flutterOpen Targets
0.06Suggestive
Abnormal pupillary functionOpen Targets
0.05Suggestive
hepatocellular carcinomaOpen Targets
0.05Suggestive
Dravet syndromeOpen Targets
0.05Suggestive
adrenal cortex carcinomaOpen Targets
0.04Suggestive
acute lymphoblastic leukemiaOpen Targets
0.04Suggestive
Li-Fraumeni syndromeOpen Targets
0.04Suggestive
Alzheimer diseaseOpen Targets
0.04Suggestive
hypermetabolism due to uncoupled mitochondrial oxidative phosphorylation 2Open Targets
0.04Suggestive
atrial fibrillationOpen Targets
0.03Suggestive
Miyoshi myopathyOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
FAUProtein interaction100%RPLP0Protein interaction100%RPS3AProtein interaction100%RPS3Protein interaction100%RPS11Protein interaction100%RPL31Protein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
42%
Lung
28%
Brain
27%
Liver
21%
Heart
15%
Gene Interaction Network
Click a node to explore
HMGN1FAURPLP0RPS3ARPS3RPS11RPL31
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt P05114
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.89LoF Tolerant
pLIⓘ
0.08Tolerant
Observed/Expected LoF0.50 [0.29–0.89]
RankingsWhere HMGN1 stands among ~20K protein-coding genes
  • #4,319of 20,598
    Most Researched110 · top quartile
  • #8,032of 17,882
    Most Constrained (LOEUF)0.89
Genes detectedHMGN1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Myocardial reprogramming by HMGN1 underlies heart defects in trisomy 21.
PMID: 41125893
Nature · 2025
1.00
2
Human HMGN1 and HMGN2 are not required for transcription-coupled DNA repair.
PMID: 32152397
Sci Rep · 2020
0.90
3
Shaking up the silence: consequences of HMGN1 antagonizing PRC2 in the Down syndrome brain.
PMID: 36463299
Epigenetics Chromatin · 2022
0.80
4
High-mobility group nucleosome binding domain 1 (HMGN1) functions as a Th1-polarizing alarmin.
PMID: 29503123
Semin Immunol · 2018
0.70
5
HMGNs: The enhancer charmers.
PMID: 26709929
Bioessays · 2016
0.60