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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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INO80C
INO80 complex subunit C
Chromosome 18 · 18q12.2
NCBI Gene: 125476Ensembl: ENSG00000153391.16HGNC: HGNC:26994UniProt: K7EIY8
38PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
DNA RepairTranscription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingpositive regulation of DNA-templated transcriptionregulation of cell cycleregulation of DNA strand elongationneurodegenerative diseaseHypercholesterolemiaattention deficit hyperactivity disorderhereditary attention deficit-hyperactivity disorder
✦AI Summary

INO80C is a core component of the INO80 chr18 remodeling complex that coordinates transcriptional regulation, DNA replication, and genomic stability 1. Mechanistically, INO80C evicts promoter nucleosomes at highly expressed genes independently of histone variant H2A.Z, functioning alongside SWI/SNF and RSC complexes to establish nucleosome-depleted regions and enhance transcription factor binding and TATA-binding protein recruitment 23. At replication origins, INO80C co-localizes with the origin recognition complex and cooperates with Mot1/NC2 transcription factors to prevent pervasive transcription, thereby maintaining genomic stability and preventing DNA double-strand breaks 1. INO80C operates through two distinct mechanistic classes: Canonical INO80 targets with open chr18 signatures that interact with the acetyltransferase P300, and Non-Canonical INO80 targets with repressive chr18 marked by H3K27me3 4. Disease relevance includes acute myeloid leukemia, where INO80C::SETBP1 fusion genes have been identified 5, and nicotine dependence phenotypes 6. Clinically, INO80C may serve as a prognostic biomarker for acute myelogenous leukemia through its involvement in cancer-related functions including cell proliferation and DNA recombination 7.

Sources cited
1
INO80C prevents promiscuous transcription at replication origins and maintains genomic stability by cooperating with Mot1/NC2
PMID: 32905765
2
INO80C evicts promoter nucleosomes and stimulates transcription independently of H2A.Z
PMID: 32663283
3
INO80C cooperates with RSC and SWI/SNF in nucleosome eviction and enhances activator binding and TBP recruitment
PMID: 35793348
4
INO80C::SETBP1 fusion gene identified in acute myeloid leukemia patient
PMID: 36472727
5
INO80C associated with time to first cigarette (TTFC) nicotine dependence phenotype in genome-wide meta-analysis
PMID: 31294817
6
INO80C operates through Canonical and Non-Canonical classes with distinct chromatin signatures and protein interactions
PMID: 29432129
7
INO80C identified as prognostic biomarker for acute myelogenous leukemia in chromatin state-marked regulatory networks
PMID: 31537905
8
INO80 family remodelers regulate chromatin composition and structure through ATP-dependent nucleosome modification
PMID: 25088669
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.53Moderate
HypercholesterolemiaOpen Targets
0.24Weak
attention deficit hyperactivity disorderOpen Targets
0.06Suggestive
hereditary attention deficit-hyperactivity disorderOpen Targets
0.05Suggestive
schizophrenia 15Open Targets
0.05Suggestive
Phelan-McDermid syndromeOpen Targets
0.04Suggestive
hepatocellular carcinomaOpen Targets
0.04Suggestive
thrombophilia due to protein C deficiency, autosomal recessiveOpen Targets
0.03Suggestive
respiratory tract infectious disorderOpen Targets
0.03Suggestive
Myasthenia gravisOpen Targets
0.02Suggestive
injuryOpen Targets
0.02Suggestive
ovarian carcinomaOpen Targets
0.02Suggestive
acute myeloid leukemiaOpen Targets
0.01Suggestive
liver cancerOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
bone metastasisOpen Targets
0.00Suggestive
head and neck squamous cell carcinomaOpen Targets
0.00Suggestive
Alzheimer diseaseOpen Targets
0.00Suggestive
cancerOpen Targets
0.00Suggestive
invasive breast ductal carcinomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
INO80DProtein interaction100%SRCAPProtein interaction100%BRD8Protein interaction100%ING3Protein interaction100%EP400Protein interaction100%ANP32EProtein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Heart
40%
Liver
35%
Lung
34%
Brain
32%
Ovary
20%
Gene Interaction Network
Click a node to explore
INO80CINO80DSRCAPBRD8ING3EP400ANP32E
PROTEIN STRUCTURE
Preparing viewer…
PDB7ZI4 · 3.20 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.67LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.96 [0.56–1.67]
RankingsWhere INO80C stands among ~20K protein-coding genes
  • #10,497of 20,598
    Most Researched38
  • #15,968of 17,882
    Most Constrained (LOEUF)1.67
Genes detectedINO80C
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
INO80C Remodeler Maintains Genomic Stability by Preventing Promiscuous Transcription at Replication Origins.
PMID: 32905765
Cell Rep · 2020
1.00
2
Identification of novel PIEZO1::CBFA2T3 and INO80C::SETBP1 fusion genes in an acute myeloid leukemia patient by RNA-seq.
PMID: 36472727
Mol Biol Rep · 2023
0.90
3
Chromatin remodeler Ino80C acts independently of H2A.Z to evict promoter nucleosomes and stimulate transcription of highly expressed genes in yeast.
PMID: 32663283
Nucleic Acids Res · 2020
0.80
4
Distinct functions of three chromatin remodelers in activator binding and preinitiation complex assembly.
PMID: 35793348
PLoS Genet · 2022
0.70
5
Genome-Wide Meta-Analyses of FTND and TTFC Phenotypes.
PMID: 31294817
Nicotine Tob Res · 2020
0.60