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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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INO80D
INO80 complex subunit D
Chromosome 2 · 2q33.3
NCBI Gene: 54891Ensembl: ENSG00000114933.17HGNC: HGNC:25997UniProt: Q53TQ3
32PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
DNA RepairTranscription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
regulation of cell cycleregulation of DNA strand elongationregulation of chromosome organizationpositive regulation of DNA-templated transcription
✦AI Summary

INO80D (INO80 complex subunit D) is a regulatory component of the chr2 remodeling INO80 complex involved in transcriptional regulation, DNA replication, and DNA repair 1. The INO80 complex performs ATP-dependent nucleosome sliding and controls chromosome 2 and structure 1. INO80D expression is regulated post-transcriptionally through a competitive inhibition mechanism, where the lncRNA CR933609 acts as a decoy to protect INO80D mRNA from miRNA-5096-mediated downregulation in non-small cell lung cancer cells 2. INO80D expression is significantly decreased in cancer tissues including NSCLC 2. Disease relevance spans multiple conditions: a homozygous missense mutation (Ser818Cys) in INO80D was identified in siblings with aortic hypoplasia, calcific atherosclerosis, systolic hypertension, and premature cataract, suggesting a link between INO80D dysfunction and accelerated arterial aging 1. Mutations in INO80D occur frequently in translocation renal cell carcinoma (TRCC), where INO80D knockdown decreased cell proliferation 3. INO80D has been identified as a key gene in polycystic ovary syndrome pathogenesis 4 and in sulfur mustard chemical injury responses 5. INO80D is dysregulated in rhabdomyosarcoma variants and participates in aging-related processes during physiological stress responses 6.

Sources cited
1
INO80D is a subunit of the INO80 chromatin remodeling complex involved in DNA binding, chromatin modification, chromosome organization, and ATP-dependent nucleosome sliding; Ser818Cys mutation links INO80D to aortic hypoplasia and accelerated arterial aging
PMID: 25122053
2
lncRNA CR933609 acts as a miRNA decoy to protect INO80D mRNA from miRNA-5096 downregulation; INO80D expression is significantly decreased in NSCLC and cancer tissues
PMID: 29750421
3
INO80D mutations occur in translocation renal cell carcinoma; INO80D knockdown decreases cell proliferation in TRCC cells
PMID: 24899691
4
INO80D identified as key acetylation-related gene marker in polycystic ovary syndrome pathogenesis
PMID: 39585802
5
INO80D identified as key gene in lncRNA-miRNA-mRNA network of sulfur mustard exposed patients with chemical injury
PMID: 39919453
6
INO80D identified as hub gene regulating cell aging and development during forced molting stress in laying hens
PMID: 34828373
7
INO80D is a common target of myeloid-specific miRNAs and is enriched in genes involved in regulation of gene expression
PMID: 22276136
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
INO80CProtein interaction100%BRD8Protein interaction94%KAT5Protein interaction94%NFRKBProtein interaction93%ACTR8Protein interaction93%EP400Protein interaction92%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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INO80DINO80CBRD8KAT5NFRKBACTR8EP400
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q53TQ3
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.35Moderately Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.24 [0.17–0.35]
RankingsWhere INO80D stands among ~20K protein-coding genes
  • #11,530of 20,598
    Most Researched32
  • #1,547of 17,882
    Most Constrained (LOEUF)0.35 · top 10%
Genes detectedINO80D
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Novel PAX3::MAML3 Fusion Identified in Alveolar Rhabdomyosarcoma, Using DNA Methylation Profiling to Expand the Genetic Spectrum of "Fusion-Positive" Cases.
PMID: 39147032
Mod Pathol · 2024
1.00
2
Genome-wide analysis of lncRNAs in 3'-untranslated regions: CR933609 acts as a decoy to protect the INO80D gene.
PMID: 29750421
Int J Oncol · 2018
0.90
3
Whole exome sequencing implicates an INO80D mutation in a syndrome of aortic hypoplasia, premature atherosclerosis, and arterial stiffness.
PMID: 25122053
Circ Cardiovasc Genet · 2014
0.80
4
Novel PAX3::INO80D Fusion in Biphenotypic Sinonasal Sarcoma in an Adult.
PMID: 37440250
JAMA Otolaryngol Head Neck Surg · 2023
0.70
5
Transcriptomic Analysis of Laying Hens Revealed the Role of Aging-Related Genes during Forced Molting.
PMID: 34828373
Genes (Basel) · 2021
0.60