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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
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PTF1A
pancreas associated transcription factor 1a
Chromosome 10 Β· 10p12.2
NCBI Gene: 256297Ensembl: ENSG00000168267.7HGNC: HGNC:23734UniProt: Q7RTS3
33PubMed Papers
22Diseases
0Drugs
7Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
cerebellum developmenttissue developmentpancreas developmentsequence-specific double-stranded DNA bindingpermanent neonatal diabetes mellitus-pancreatic and cerebellar agenesis syndromePermanent neonatal diabetes mellitus - pancreatic and cerebellar agenesispancreatic agenesis 2Partial pancreatic agenesis
✦AI Summary

PTF1A is a basic helix-loop-helix transcription factor essential for pancreatic and neural development 1. It functions as a component of the PTF1 trimeric complex and binds E-box consensus sequences to regulate target gene expression 2. In pancreas development, PTF1A is indispensable for controlling multipotent progenitor cell expansion and specifying acinar and ductal cell fates 1. PTF1A cooperates with RBP-J to activate PDX1 gene expression, a critical regulator of pancreatic development 3. Loss-of-function mutations cause pancreatic agenesis and permanent neonatal diabetes; reduced gene dosage results in pancreatic hypoplasia, glucose intolerance, and insufficient insulin secretion in a dose-dependent manner 4. PTF1A also directs retinal progenitor differentiation toward horizontal and amacrine cell fates through FOXN4 regulation and specifies inhibitory neuronal fates in neural tissues 1. Genome-wide association studies identified PTF1A variants associated with type 2 diabetes susceptibility in East Asian populations 5. PTF1A is expressed in pancreatic acinar cells where it maintains exocrine-specific gene expression; animal models utilizing Ptf1a-Cre transgenes demonstrate its critical role in pancreatic lineage specification and disease modeling 678.

Sources cited
1
PTF1A is a bHLH transcription factor expressed in pancreas, retina, and neural tissues; essential for acinar cell specification and maintenance; mutations cause pancreatic and cerebellar agenesis
PMID: 30470852
2
PTF1A is crucial for pancreas development; mutations result in neonatal diabetes and exocrine pancreatic insufficiency
PMID: 34125483
3
PTF1A and RBP-J cooperatively regulate PDX1 gene expression through binding to Area III in the Pdx1 promoter
PMID: 17803961
4
Reduced PTF1A dosage causes pancreatic hypoplasia and glucose intolerance; PTF1A is crucial for pancreatic progenitor specification, growth, beta-cell number, and endocrine function
PMID: 18591390
5
PTF1A variants identified as newly implicated in type 2 diabetes predisposition in East Asian populations
PMID: 32499647
6
Ptf1a-CreER transgenic mice used for acinar-specific gene expression studies in pancreatic cancer modeling
PMID: 38233197
7
Ptf1a-Cre transgenic mice used for pancreatic-specific STAT5 studies in KRAS-driven pancreatic tumorigenesis
PMID: 38955401
8
Ptf1a-CreER transgenic mice used to study acinar-to-ductal metaplasia and pancreatic cancer initiation
PMID: 38729450
Disease Associationsβ“˜22
permanent neonatal diabetes mellitus-pancreatic and cerebellar agenesis syndromeOpen Targets
0.77Strong
Permanent neonatal diabetes mellitus - pancreatic and cerebellar agenesisOpen Targets
0.73Strong
pancreatic agenesis 2Open Targets
0.63Moderate
Partial pancreatic agenesisOpen Targets
0.56Moderate
pancreatic agenesisOpen Targets
0.56Moderate
permanent neonatal diabetes mellitusOpen Targets
0.40Moderate
MODYOpen Targets
0.35Weak
maturity-onset diabetes of the youngOpen Targets
0.34Weak
neurodegenerative diseaseOpen Targets
0.29Weak
kallikrein, decreased urinary activity ofOpen Targets
0.27Weak
genetic disorderOpen Targets
0.19Weak
monogenic diabetesOpen Targets
0.18Weak
Neonatal insulin-dependent diabetes mellitusOpen Targets
0.12Weak
pancreatic beta cell agenesis with neonatal diabetes mellitusOpen Targets
0.12Weak
age-related macular degenerationOpen Targets
0.06Suggestive
Familial exudative vitreoretinopathyOpen Targets
0.06Suggestive
X-linked retinal dysplasiaOpen Targets
0.06Suggestive
retinitis pigmentosaOpen Targets
0.06Suggestive
neoplasmOpen Targets
0.05Suggestive
X-linked retinoschisisOpen Targets
0.05Suggestive
Pancreatic agenesis 2UniProt
Pancreatic and cerebellar agenesisUniProt
Pathogenic Variants7
NM_178161.3(PTF1A):c.571C>A (p.Pro191Thr)Pathogenic
Pancreatic agenesis 2|Kallikrein, decreased urinary activity of|Permanent neonatal diabetes mellitus-pancreatic and cerebellar agenesis syndrome
β˜…β˜…β˜†β˜†2023β†’ Residue 191
NM_178161.3(PTF1A):c.784+1G>APathogenic
Maturity-onset diabetes of the young
β˜…β˜†β˜†β˜†2023
NM_178161.3(PTF1A):c.532del (p.Ser178fs)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2019β†’ Residue 178
NM_178161.3(PTF1A):c.705del (p.Pro236fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2016β†’ Residue 236
NM_178161.3(PTF1A):c.437_460del (p.Ala146_Arg154delinsGly)Pathogenic
Permanent neonatal diabetes mellitus-pancreatic and cerebellar agenesis syndrome
β˜†β˜†β˜†β˜†2011β†’ Residue 146
NM_178161.3(PTF1A):c.705dup (p.Pro236fs)Pathogenic
Permanent neonatal diabetes mellitus-pancreatic and cerebellar agenesis syndrome
β˜†β˜†β˜†β˜†2004β†’ Residue 236
NM_178161.3(PTF1A):c.886C>T (p.Arg296Ter)Pathogenic
Permanent neonatal diabetes mellitus-pancreatic and cerebellar agenesis syndrome
β˜†β˜†β˜†β˜†2004β†’ Residue 296
View on ClinVar β†—
Related Genes
RBPJLProtein interaction99%GCGProtein interaction83%FGF10Protein interaction83%GATA6Protein interaction75%HNF1AProtein interaction75%CPA1Protein interaction74%
Tissue Expression6 tissues
Brain
100%
Ovary
31%
Bone Marrow
15%
Lung
0%
Heart
0%
Liver
0%
Gene Interaction Network
Click a node to explore
PTF1ARBPJLGCGFGF10GATA6HNF1ACPA1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q7RTS3
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.88LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF1.37 [0.93–1.88]
RankingsWhere PTF1A stands among ~20K protein-coding genes
  • #11,391of 20,598
    Most Researched33
  • #3,244of 5,498
    Most Pathogenic Variants7
  • #17,078of 17,882
    Most Constrained (LOEUF)1.88
Genes detectedPTF1A
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Identification of type 2 diabetes loci in 433,540 East Asian individuals.
PMID: 32499647
Nature Β· 2020
1.00
2
Oral bacteria accelerate pancreatic cancer development in mice.
PMID: 38233197
Gut Β· 2024
0.90
3
Pancreatic STAT5 activation promotes Kras
PMID: 38955401
Gut Β· 2024
0.80
4
Ptf1a function and transcriptional cis-regulation, a cornerstone in vertebrate pancreas development.
PMID: 34125483
FEBS J Β· 2022
0.70
5
Transcription factor Ptf1a in development, diseases and reprogramming.
PMID: 30470852
Cell Mol Life Sci Β· 2019
0.60