HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
6 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
ZNF621
zinc finger protein 621
Chromosome 3 · 3p22.1
NCBI Gene: 285268Ensembl: ENSG00000172888.12HGNC: HGNC:24787UniProt: Q6ZSS3
10PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nuclear speckprotein bindingregulation of transcription by RNA polymerase IIRNA polymerase II cis-regulatory region sequence-specific DNA bindingHydrocephalusplacenta praevianeurodegenerative diseasecorneal ulcer
✦AI Summary

ZNF621 is a zinc finger transcription factor localized to nuclear specks with DNA-binding activity specific to RNA polymerase II cis-regulatory regions 1. It functions as a transcriptional regulator involved in RNA polymerase II-mediated transcription [GO annotations]. In nasopharyngeal carcinoma, ZNF621 is positively regulated by the long non-coding RNA LINC01140 through a competing endogenous RNA mechanism involving miR-452-5p, and enhances radiosensitivity of cancer cells 1. ZNF621 functions as a PPAR-responsive gene that can be transcriptionally activated by fatty acids, particularly through PPARγ agonism in breast cancer cells 2. Additionally, ZNF621 is associated with bone mineral density as a candidate causal variant (>90% probability) for both femoral neck and lumbar spine BMD 3. The gene exhibits differential DNA methylation patterns in high-altitude polycythemia patients, ranking among the top five genes with largest methylation differences in Tibetan populations 4, and shows sensitivity to gaseous air pollutant-induced epigenetic modifications 5. ZNF621 has been identified in fusion gene formations in benign smooth-muscle tumors 6, suggesting broader roles in cellular regulation beyond transcriptional control.

Sources cited
1
ZNF621 is regulated by LINC01140 through miR-452-5p and enhances radiosensitivity in nasopharyngeal carcinoma cells
PMID: 35988287
2
ZNF621 is a PPAR-responsive gene activated by fatty acids in breast cancer cells
PMID: 28458685
3
ZNF621 variants are candidate causal SNPs for bone mineral density with >90% probability of causality
PMID: 28425624
4
ZNF621 shows differential DNA methylation in high-altitude polycythemia patients
PMID: 40326138
5
ZNF621 regulatory region shows air pollutant-induced DNA methylation changes
PMID: 35500859
6
ZNF621 is involved in fusion gene formation in leiomyomas
PMID: 34183386
Disease Associationsⓘ20
HydrocephalusOpen Targets
0.32Weak
placenta praeviaOpen Targets
0.24Weak
neurodegenerative diseaseOpen Targets
0.19Weak
corneal ulcerOpen Targets
0.18Weak
mixed connective tissue diseaseOpen Targets
0.17Weak
Abnormality of the skeletal systemOpen Targets
0.13Weak
benign neoplasmOpen Targets
0.12Weak
nervous system diseaseOpen Targets
0.11Weak
ulcerative colitisOpen Targets
0.10Weak
SplenomegalyOpen Targets
0.10Suggestive
hidradenitisOpen Targets
0.09Suggestive
colorectal cancerOpen Targets
0.06Suggestive
central nervous system infectionOpen Targets
0.04Suggestive
colorectal adenomaOpen Targets
0.04Suggestive
polyp of colonOpen Targets
0.04Suggestive
intestinal diseaseOpen Targets
0.03Suggestive
benign colon neoplasmOpen Targets
0.03Suggestive
colonic neoplasmOpen Targets
0.03Suggestive
rectal neoplasmOpen Targets
0.03Suggestive
anal neoplasmOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
SLC7A6OSShared pathway100%ZNF585BShared pathway100%FERD3LShared pathway100%TCF24Shared pathway100%BHLHA9Shared pathway100%ZNF674Shared pathway100%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
64%
Lung
59%
Liver
59%
Heart
53%
Brain
42%
Gene Interaction Network
Click a node to explore
ZNF621SLC7A6OSZNF585BFERD3LTCF24BHLHA9ZNF674
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q6ZSS3
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.85LoF Tolerant
pLIⓘ
0.34Tolerant
Observed/Expected LoF0.40 [0.21–0.85]
RankingsWhere ZNF621 stands among ~20K protein-coding genes
  • #17,241of 20,598
    Most Researched10
  • #7,353of 17,882
    Most Constrained (LOEUF)0.85
Genes detectedZNF621
Sources retrieved6 papers
Response time—
📄 Sources
6▼
1
LINC01140 Regulates Radiosensitivity of Nasopharyngeal Carcinoma Cells Through the ceRNA Network.
PMID: 35988287
Cell Mol Biol (Noisy-le-grand) · 2022
1.00
2
[Study on Differential DNA Methylation Profiles of Patients with High-Altitude Polycythemia].
PMID: 40326138
Zhongguo Shi Yan Xue Ye Xue Za Zhi · 2025
0.83
3
Gaseous air pollutants and DNA methylation in a methylome-wide association study of an ethnically and environmentally diverse population of U.S. adults.
PMID: 35500859
Environ Res · 2022
0.67
4
Several Fusion Genes Identified in a Spermatic Cord Leiomyoma With Rearrangements of Chromosome Arms 3p and 21q.
PMID: 34183386
Cancer Genomics Proteomics · 2021
0.50
5
A Statistical Approach to Fine Mapping for the Identification of Potential Causal Variants Related to Bone Mineral Density.
PMID: 28425624
J Bone Miner Res · 2017
0.33