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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SOX13
SRY-box transcription factor 13
Chromosome 1 · 1q32.1
NCBI Gene: 9580Ensembl: ENSG00000143842.16HGNC: HGNC:11192UniProt: Q9UN79
51PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
cytoplasmnegative regulation of transcription by RNA polymerase IIDNA-binding transcription repressor activity, RNA polymerase II-specifictranscription cis-regulatory region bindingneurodegenerative diseaseLoss of consciousnessprostate carcinomahyperpituitarism
✦AI Summary

SOX13 is a group D SRY-box transcription factor that binds DNA at the consensus sequence 5'-AACAAT-3' 1 and functions as a key cell fate modulator across multiple lineages 2. In immune development, SOX13 modulates T cell specification, particularly gamma-delta T cell differentiation and IL-17A production, through interactions with TCF7/TCF1 3. SOX13 acts as a Wnt signaling inhibitor 4, though it can also promote canonical Wnt signaling when regulated by POU3F2 in neural progenitors 5. In neural development, SOX13 regulates oligodendrocyte differentiation through MPZ and MBP promoter binding 6. Clinically, SOX13 demonstrates significant disease relevance. Truncating de novo variants in SOX13 are associated with congenital anomalies of the kidney and urinary tract (CAKUT) 7. In cancer, SOX13 expression is elevated in gastric and breast cancers, correlating with poor prognosis and therapeutic resistance [PMID:38769295; 87]. In hepatocellular carcinoma, SOX13 promotes metastasis by transcriptionally activating Twist1 9. Notably, targeting SOX13 with zanamivir overcomes ferroptosis resistance in gastric cancer by disrupting electron transport chain supercomplex assembly 10. These findings establish SOX13 as both a developmental regulator and potential therapeutic target in human disease.

Sources cited
1
SOX13 binds to DNA at consensus sequence 5'-AACAAT-3'
PMID: 10871192
2
SOX13 is a group D SRY-box transcription factor and key cell fate modulator
PMID: 19647094
3
SOX13 modulates gamma-delta T cell differentiation and IL-17A production
PMID: 35262957
4
SOX13 is an inhibitor of Wnt signaling
PMID: 20028982
5
POU3F2 regulates SOX13 to promote canonical Wnt signaling in neural progenitors
PMID: 40498903
6
SOX13 regulates oligodendrocyte differentiation through MPZ and MBP
PMID: 10854791
7
Truncating de novo variants in SOX13 are associated with CAKUT
PMID: 40223730
8
SOX13 promotes ferroptosis resistance in gastric cancer; zanamivir targets SOX13 to overcome resistance
PMID: 38769295
9
SOX13 is elevated in breast cancer and correlates with poor prognosis
PMID: 38707897
10
SOX13 promotes hepatocellular carcinoma metastasis via Twist1 transcriptional activation
PMID: 32461589
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.45Moderate
Loss of consciousnessOpen Targets
0.27Weak
prostate carcinomaOpen Targets
0.26Weak
hyperpituitarismOpen Targets
0.25Weak
complicationOpen Targets
0.20Weak
medical procedureOpen Targets
0.20Weak
strictureOpen Targets
0.20Weak
trauma complicationOpen Targets
0.18Weak
alopeciaOpen Targets
0.15Weak
chronic laryngitisOpen Targets
0.13Weak
ovarian neoplasmOpen Targets
0.09Suggestive
breast cancerOpen Targets
0.09Suggestive
metabolic syndromeOpen Targets
0.08Suggestive
stomach neoplasmOpen Targets
0.07Suggestive
Alzheimer diseaseOpen Targets
0.07Suggestive
mouth diseaseOpen Targets
0.07Suggestive
neoplasmOpen Targets
0.06Suggestive
vascular diseaseOpen Targets
0.06Suggestive
Okt4 epitope deficiencyOpen Targets
0.06Suggestive
Blackfan-Diamond anemiaOpen Targets
0.05Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
SOX5Protein interaction88%CEP85Protein interaction88%TCF7Protein interaction73%DKKL1Shared pathway33%DKK3Shared pathway29%TLE7Shared pathway25%
Tissue Expression6 tissues
Lung
100%
Liver
75%
Ovary
64%
Brain
55%
Heart
45%
Bone Marrow
1%
Gene Interaction Network
Click a node to explore
SOX13SOX5CEP85TCF7DKKL1DKK3TLE7
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q9UN79
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.63LoF Tolerant
pLIⓘ
0.02Tolerant
Observed/Expected LoF0.45 [0.33–0.63]
RankingsWhere SOX13 stands among ~20K protein-coding genes
  • #8,735of 20,598
    Most Researched51
  • #4,465of 17,882
    Most Constrained (LOEUF)0.63 · top quartile
Genes detectedSOX13
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Targeting SOX13 inhibits assembly of respiratory chain supercomplexes to overcome ferroptosis resistance in gastric cancer.
PMID: 38769295
Nat Commun · 2024
1.00
2
Gut microbiota-derived short-chain fatty acids regulate group 3 innate lymphoid cells in HCC.
PMID: 35262957
Hepatology · 2023
0.90
3
Genomic characterisation and fine mapping of the human SOX13 gene.
PMID: 10854791
Gene · 2000
0.80
4
The SoxD transcription factors--Sox5, Sox6, and Sox13--are key cell fate modulators.
PMID: 19647094
Int J Biochem Cell Biol · 2010
0.70
5
POU3F2 regulates canonical Wnt signalling via SOX13 and ADNP to expand the neural progenitor population.
PMID: 40498903
Brain · 2025
0.60