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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
ZNF423
zinc finger protein 423
Chromosome 16 Β· 16q12.1
NCBI Gene: 23090Ensembl: ENSG00000102935.12HGNC: HGNC:16762UniProt: A0A7P0Q1F0
53PubMed Papers
22Diseases
0Drugs
4Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedTranscription Factor
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
nucleoplasmprotein localization to ciliumprotein bindingsequence-specific DNA bindingJoubert syndrome with oculorenal defectJoubert syndromehypertensionAbnormality of the skeletal system
✦AI Summary

ZNF423 is a multifunctional transcription factor that functions as both transcriptional activator and repressor depending on cellular context. In BMP signaling, ZNF423 associates with SMADs to activate BMP target genes, while in olfactory neurogenesis, it represses EBF1-mediated transcription to regulate the differentiation-to-maturation transition in olfactory receptor neurons [UniProt annotation]. ZNF423 expression is epigenetically regulated by DNA methylation and nucleosome occupancy, controlling adipogenic commitment through modulation of PPARΞ³ expression 1. The gene is under estrogen regulation in breast cancer cells, with SNPs in ZNF423 introns modulating estrogen receptor binding to distant enhancer regions in a SERM-dependent manner 2. ZNF423 regulates the AMPK signaling pathway and metformin response in SNP- and estrogen-dependent fashion, with potential implications for breast cancer treatment 3. In cholangiocarcinoma, ZNF423 is induced by oxidative stress and promotes cell proliferation and invasion 4. Functionally, ZNF423 acts as an EBF1 antagonist in B-lymphoid development 5 and promotes osteogenic differentiation while suppressing adipogenesis through chaperone-mediated autophagy 6. Genetic studies link ZNF423 variants to Crohn's disease susceptibility 7 and to disease risk in gastrointestinal disorders associated with neuroticism.

Sources cited
1
ZNF423 expression is epigenetically regulated by DNA methylation and nucleosome occupancy during adipogenic commitment and is dysregulated in hypertrophic obesity
PMID: 29067487
2
ZNF423 SNPs in introns modulate estrogen receptor binding to ERE motifs at distance in a SERM-dependent manner
PMID: 28856246
3
ZNF423 modulates AMPK signaling pathway and metformin response in SNP and estrogen-dependent fashion
PMID: 34001842
4
ZNF423 is induced by oxidative stress and promotes cholangiocarcinoma cell proliferation and invasion
PMID: 31284679
5
ZNF423 functions as a potent inhibitor of EBF1 in B-lymphoid development and B-cell malignancies
PMID: 26788497
6
ZNF423 is selectively removed by chaperone-mediated autophagy to promote osteogenic while suppressing adipogenic differentiation
PMID: 34214490
7
ZNF423 variants at locus 16q12.1 are associated with Crohn's disease risk in the context of neuroticism
PMID: 40226707
Disease Associationsβ“˜22
Joubert syndrome with oculorenal defectOpen Targets
0.53Moderate
Joubert syndromeOpen Targets
0.50Moderate
hypertensionOpen Targets
0.49Moderate
Abnormality of the skeletal systemOpen Targets
0.49Moderate
Joubert syndrome 19Open Targets
0.49Moderate
mathematical abilityOpen Targets
0.43Moderate
smoking initiationOpen Targets
0.41Moderate
essential hypertensionOpen Targets
0.40Weak
Increased blood pressureOpen Targets
0.39Weak
eye diseaseOpen Targets
0.37Weak
Infantile nephronophthisisOpen Targets
0.37Weak
nephronophthisis 2Open Targets
0.37Weak
Abnormal brain morphologyOpen Targets
0.33Weak
Back painOpen Targets
0.33Weak
injuryOpen Targets
0.33Weak
alopecia areataOpen Targets
0.32Weak
alcohol drinkingOpen Targets
0.32Weak
cardiovascular diseaseOpen Targets
0.32Weak
androgenetic alopeciaOpen Targets
0.30Weak
Precordial painOpen Targets
0.28Weak
Joubert syndrome 19UniProt
Nephronophthisis 14UniProt
Pathogenic Variants4
NM_001379286.1(ZNF423):c.2555G>A (p.Gly852Glu)Likely pathogenic
Nephronophthisis 14|ZNF423-related disorder
β˜…β˜†β˜†β˜†2024β†’ Residue 852
NM_001379286.1(ZNF423):c.3189dup (p.Asn1064fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2016β†’ Residue 1064
NM_001379286.1(ZNF423):c.1542del (p.Asn515fs)Pathogenic
Joubert syndrome 19
β˜†β˜†β˜†β˜†2012β†’ Residue 515
NM_001379286.1(ZNF423):c.3853C>T (p.His1285Tyr)Pathogenic
Joubert syndrome 19
β˜†β˜†β˜†β˜†2012β†’ Residue 1285
View on ClinVar β†—
Related Genes
RBBP7Protein interaction100%SMAD4Protein interaction100%MBD3L1Protein interaction91%MTA1Protein interaction83%ZNF219Protein interaction80%EBF2Protein interaction79%
Tissue Expression6 tissues
Brain
100%
Heart
60%
Ovary
46%
Lung
15%
Liver
4%
Bone Marrow
2%
Gene Interaction Network
Click a node to explore
ZNF423RBBP7SMAD4MBD3L1MTA1ZNF219EBF2
PROTEIN STRUCTURE
Preparing viewer…
PDB2MDG Β· NMR
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.20Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.12 [0.08–0.20]
RankingsWhere ZNF423 stands among ~20K protein-coding genes
  • #8,517of 20,598
    Most Researched53
  • #3,793of 5,498
    Most Pathogenic Variants4
  • #429of 17,882
    Most Constrained (LOEUF)0.20 Β· top 5%
Genes detectedZNF423
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
PMID: 27336129
1.00
2
PMID: 20301500
0.90
3
Vangl2 limits chaperone-mediated autophagy to balance osteogenic differentiation in mesenchymal stem cells.
PMID: 34214490
Dev Cell Β· 2021
0.80
4
Epigenetic modifications of the Zfp/ZNF423 gene control murine adipogenic commitment and are dysregulated in human hypertrophic obesity.
PMID: 29067487
Diabetologia Β· 2018
0.70
5
Shared and Unique Genetic Links between Neuroticism and Gastrointestinal Tract Diseases.
PMID: 40226707
Depress Anxiety Β· 2024
0.60