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3 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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H2BC9
H2B clustered histone 9
Chromosome 6 · 6p22.2
NCBI Gene: 8345Ensembl: ENSG00000275713.3HGNC: HGNC:4755UniProt: Q93079
61PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
enzyme bindingprotein bindingextracellular exosomeubiquitin-like protein ligase bindingviral diseaseinfectious diseasebreast carcinomacancer
✦AI Summary

H2BC9 (H2B clustered histone 9) is a core histone protein functioning as a structural component of nucleosomes that regulates DNA accessibility and chr6 organization 1. As a member of the histone H2B family, H2BC9 plays essential roles in gene expression regulation, chromosome 6 maintenance, DNA repair, and cell cycle control 1. Mechanistically, H2BC9 operates through post-translational modifications, particularly lactylation at lysine 44 (K44), which enhances transcriptional activity of Wnt7b and activates Wnt/β-catenin signaling 2. This lactylation-dependent activation is modulated by lactate as an epigenetic signaling molecule 2. Clinically, H2BC9 demonstrates significant disease relevance in multiple cancers. In head and neck squamous cell carcinoma (HNSCC), H2BC9 is markedly upregulated and associated with advanced-stage disease and poor prognosis 1. Similarly, in esophageal squamous cell carcinoma (ESCC), H2BC9 overexpression correlates with poor prognosis and is linked to chemoresistance and immunosuppressive tumor microenvironment 2. H2BC9 silencing suppresses cancer cell proliferation, induces G2/M arrest, and enhances apoptosis 1. These findings suggest H2BC9 may serve as a diagnostic and prognostic biomarker and potential therapeutic target in squamous cell carcinomas.

Sources cited
1
H2BC9 is upregulated in HNSCC, associated with advanced disease and poor prognosis; regulates gene expression, chromosome structure, DNA repair, and cell cycle; silencing suppresses proliferation and induces apoptosis
PMID: 39865289
2
H2BC9 K44 lactylation activates Wnt7b transcription and Wnt/β-catenin pathway in ESCC; lactate induces H2BC9 lactylation; associated with poor prognosis, chemoresistance, and immunosuppressive microenvironment
PMID: 41088127
⚠Limited data available — This gene has 2 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
viral diseaseOpen Targets
0.50Moderate
infectious diseaseOpen Targets
0.50Moderate
breast carcinomaOpen Targets
0.38Weak
cancerOpen Targets
0.37Weak
dengue diseaseOpen Targets
0.37Weak
melanomaOpen Targets
0.37Weak
head and neck squamous cell carcinomaOpen Targets
0.08Suggestive
gliomaOpen Targets
0.06Suggestive
non-small cell lung carcinomaOpen Targets
0.05Suggestive
central nervous system cancerOpen Targets
0.05Suggestive
neoplasmOpen Targets
0.03Suggestive
lung adenocarcinomaOpen Targets
0.02Suggestive
hepatocellular carcinomaOpen Targets
0.02Suggestive
Miyoshi myopathyOpen Targets
0.01Suggestive
lung carcinomaOpen Targets
0.01Suggestive
papillary thyroid carcinomaOpen Targets
0.01Suggestive
laryngotracheoesophageal cleftOpen Targets
0.01Suggestive
endometrial carcinomaOpen Targets
0.01Suggestive
cystic fibrosisOpen Targets
0.01Suggestive
lung cancerOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
H2BC13Shared pathway100%H2AC8Protein interaction100%H2AC20Protein interaction100%H3-4Protein interaction100%H3-3BProtein interaction100%H3C13Protein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
11%
Lung
10%
Liver
1%
Heart
0%
Ovary
0%
Gene Interaction Network
Click a node to explore
H2BC9H2BC13H2AC8H2AC20H3-4H3-3BH3C13
PROTEIN STRUCTURE
Preparing viewer…
PDB8OL1 · 3.50 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.96LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.82 [1.04–1.96]
RankingsWhere H2BC9 stands among ~20K protein-coding genes
  • #7,562of 20,598
    Most Researched61
  • #17,737of 17,882
    Most Constrained (LOEUF)1.96
Genes detectedH2BC9
Sources retrieved3 papers
Response time—
📄 Sources
3
1
Evaluating H2BC9 as a potential diagnostic and prognostic biomarker in head and neck squamous cell carcinoma.
PMID: 39865289
Eur J Med Res · 2025
1.00
2
H2BC9 lactylation modulates esophageal squamous cell carcinoma progression via the Wnt/β-catenin signaling pathway.
PMID: 41088127
J Transl Med · 2025
0.67
3
Identification of HIST1H2BH as the hub gene associated with multiple myeloma using integrated bioinformatics analysis.
PMID: 38568025
Hematology · 2024
0.33